Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008968.1 Length=3868 Score E Sequences producing significant alignments: (Bits) Value seq9546 273 5e-70 seq1693 273 5e-70 >seq9546 Length=16069 Score = 273 bits (302), Expect = 5e-70 Identities = 243/300 (81%), Gaps = 18/300 (6%) Strand=Plus/Plus Query 2952 TAAGGCTGCAAGCGAAGTTGCTAAACGTGTTCAGAGCCTACGAAGATCGTGTCGATTGCA 3011 ||||||| ||||| |||| || ||||||||||||||||||||||||||||||||| ||| Sbjct 12946 TAAGGCTTCAAGCAAAGTGGC--AACGTGTTCAGAGCCTACGAAGATCGTGTCGATAGCA 13003 Query 3012 TCTCCTACCTACTTTTTATATGTTAGACAACTTATCTATATGTTGT-TGCNNNNNNNNNN 3070 ||||||| ||| |||| ||||| || || |||| |||||||| ||| Sbjct 13004 TCTCCTATCTATTTTTAATATGGTAACCAGCTTA-CTATATGTCCCATGC---------- 13052 Query 3071 TAATGGATACAAACCCACTGGAACTGCAATCGCCAGAGCCGTTTGCCAGGGTTTCAATAC 3130 ||| |||||||||||||||| ||||| ||||||||||| | | ||||||||||||| | Sbjct 13053 -AATTGATACAAACCCACTGGCACTGCGATCGCCAGAGCTGCCTTCCAGGGTTTCAATCC 13111 Query 3131 CTATTGAACAATTATGCTCTATCAGTAGGGTTAGAGTAAGAAAATGCAGAGATTATCATT 3190 ||||||| ||| || ||||| | | | || ||||| |||||| ||||||||||||||| Sbjct 13112 CTATTGAGAAATCATACTCTA-CGGGAAGGCAAGAGTGAGAAAAAGCAGAGATTATCATT 13170 Query 3191 TATCCATTTATTGATCTTTAAAACTGACAGTAGTAGGCGAGTATGTTGATATGTTAGGCG 3250 ||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||| Sbjct 13171 TATAAATTTATTGATCTTTAAAACCGACAGTAGTAGGCGAGTA--TAAGTATGTTAGGCG 13228 Score = 262 bits (290), Expect = 1e-66 Identities = 275/358 (77%), Gaps = 35/358 (10%) Strand=Plus/Plus Query 1194 AACGGTCAGCATCCATCAGTACCGAGCGAAAGAATGCATAAAGGT----------AGTCA 1243 ||| |||||||||||||||||||||||||||||| |||| |||| || || Sbjct 12523 AACAGTCAGCATCCATCAGTACCGAGCGAAAGAACGCATCAAGGGGAAAGACTCAAGCCA 12582 Query 1244 TTGAAAGACTCAAGCCGAACAGGTAGTTATGCATCGCCTCCGTCTGGACTGCAGAGTCCA 1303 | ||||||||| || |||||||| ||||||| |||||| ||| || | ||||| | Sbjct 12583 TAGAAAGACTCGAGTGGAACAGGTGGTTATGCCCTGCCTCCTTCTAGATTTCAGAGCCTC 12642 Query 1304 ATACATTACGGACTTTA---TAT---CACTAAAGT----------GCATC----AGTACC 1343 ||||||||| |||||| ||| || ||| | ||||| |||||| Sbjct 12643 ATACATTACAGACTTTGCGGTATGTGCATAAAAATCTAACGGTCAGCATCTATCAGTACC 12702 Query 1344 GAACCAATGAATGCGTCAAGGTAAACATT-AGATACTTGAGCCAATCAGGTGGTTACGCC 1402 ||||||| |||||| ||||| ||| |||| | | |||| |||||| |||||| ||| ||| Sbjct 12703 GAACCAAAGAATGCATCAAGATAAGCATTGACAGACTTAAGCCAAACAGGTGCTTATGCC 12762 Query 1403 CCGCCCCTCTTCCTTTCCTTATCAGCGTGGAGTGGAGGGGATAAAGCATTTGTTTACTTT 1462 | |||||| |||| | |||||||| ||||||||||||||||| || |||||||||||| Sbjct 12763 C-GCCCCT--TCCTCTTCTTATCAGAGTGGAGTGGAGGGGATAG-GCCTTTGTTTACTTT 12818 Query 1463 AACAAATCTACACTGTTTTAAGTCTAGCGTGTAGCAACCAGACCCTGTTCTAACGCTA 1520 | ||||||||| |||| ||||||||||| ||||||||||| |||||| |||||||| Sbjct 12819 AGCAAATCTACTCTGTGTTAAGTCTAGCCTGTAGCAACCATACCCTGCGTTAACGCTA 12876 Score = 210 bits (232), Expect = 5e-51 Identities = 162/190 (85%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 2751 TAAGGCTGCAAGCGAAGTTGCAAAACGTGTTCAGAGCCTACGAAGATCGTGTCGATTGCA 2810 ||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| ||| Sbjct 12946 TAAGGCTTCAAGCAAAGTGGCAA--CGTGTTCAGAGCCTACGAAGATCGTGTCGATAGCA 13003 Query 2811 TCTCCTACCTACTTTTTATATGTTAGACGACTTATCTATATGTTTCATACAATTGATACA 2870 ||||||| ||| |||| ||||| || | |||| |||||||| ||| ||||||||||| Sbjct 13004 TCTCCTATCTATTTTTAATATGGTAACCAGCTTA-CTATATGTCCCATGCAATTGATACA 13062 Query 2871 AACCCACTGGAACTGCAATCGTCAGAGCTGGTTGCCGGGGTTTCAATACCTATTGAAAAA 2930 |||||||||| ||||| |||| |||||||| | || |||||||||| |||||||| ||| Sbjct 13063 AACCCACTGGCACTGCGATCGCCAGAGCTGCCTTCCAGGGTTTCAATCCCTATTGAGAAA 13122 Query 2931 TCATGCTCTA 2940 |||| ||||| Sbjct 13123 TCATACTCTA 13132 Score = 150 bits (166), Expect = 4e-33 Identities = 167/219 (76%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 3334 CTTATTGATTGCGATGGTGGAAGAAGTCCAACACTTATTTTCTGAACCACGCTCTCGCGG 3393 || || ||||| || ||||||| |||| |||||||||||||||||| |||||||||||| Sbjct 11307 CTGATGGATTGGGACGGTGGAAAAAGTTCAACACTTATTTTCTGAAGAACGCTCTCGCGG 11366 Query 3394 CTGCGGCCGCGACAGCTACCCCCGCCGCGTTTCGAGCCCGATCTGCTTGCT--TTCGAGA 3451 |||| ||| | || |||||| ||||| | || |||||| ||||| ||| ||| || Sbjct 11367 CTGCAGCCACCACTGCTACCACCGCCCCTGTTTGAGCCCACTCTGC--GCTTCTTCCAGC 11424 Query 3452 TTCCTCGGCCGCTCGCTGGGCTGCCTCGGCTAGTG--CCTTAGCTCTTTCTTCCCGTTGG 3509 ||| ||||| ||||| ||||||||| | | || | || |||||||| | | Sbjct 11425 TTCATCGGCATGTCGCTTGGCTGCCTC--CAAATGGTTCGCAGTTCTTTCTTTCTGCCTT 11482 Query 3510 CGACATTCGGCCGCATATTTCTGCACTTTTTCTTCTTGT 3548 |||||| | | ||||||| |||| |||||||||||||| Sbjct 11483 CGACATGCAGTGGCATATTCCTGCGCTTTTTCTTCTTGT 11521 Score = 107 bits (118), Expect = 5e-20 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1518 CTATTTACTTTTCATATGTTAACTAACTTACCATATGTTTCATGCAATTGATACAAACCT 1577 |||| || |||| ||||| |||| | ||||| |||||| ||||||||||||||||||| Sbjct 13008 CTATCTATTTTTAATATGGTAACCAGCTTACTATATGTCCCATGCAATTGATACAAACCC 13067 Query 1578 ACTGGAACTGCAATCGCCAGAGTTGGTTGCCAGAGTTTCAAT 1619 ||||| ||||| |||||||||| || | |||| |||||||| Sbjct 13068 ACTGGCACTGCGATCGCCAGAGCTGCCTTCCAGGGTTTCAAT 13109 Score = 95.1 bits (104), Expect = 3e-16 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1194 AACGGTCAGCATCCATCAGTACCGAGCGAAAGAATGCATAAAGGTAGTCATTGAAAGACT 1253 ||||||||||||| ||||||||||| | ||||||||||| ||| || |||||| ||||| Sbjct 12680 AACGGTCAGCATCTATCAGTACCGAACCAAAGAATGCATCAAGATAAGCATTGACAGACT 12739 Query 1254 CAAGCCGAACAGGTAGTTATGC 1275 ||||| ||||||| |||||| Sbjct 12740 TAAGCCAAACAGGTGCTTATGC 12761 >seq1693 Length=102259 Score = 273 bits (302), Expect = 5e-70 Identities = 243/300 (81%), Gaps = 18/300 (6%) Strand=Plus/Plus Query 2952 TAAGGCTGCAAGCGAAGTTGCTAAACGTGTTCAGAGCCTACGAAGATCGTGTCGATTGCA 3011 ||||||| ||||| |||| || ||||||||||||||||||||||||||||||||| ||| Sbjct 88116 TAAGGCTTCAAGCAAAGTGGC--AACGTGTTCAGAGCCTACGAAGATCGTGTCGATAGCA 88173 Query 3012 TCTCCTACCTACTTTTTATATGTTAGACAACTTATCTATATGTTGT-TGCNNNNNNNNNN 3070 ||||||| ||| |||| ||||| || || |||| |||||||| ||| Sbjct 88174 TCTCCTATCTATTTTTAATATGGTAACCAGCTTA-CTATATGTCCCATGC---------- 88222 Query 3071 TAATGGATACAAACCCACTGGAACTGCAATCGCCAGAGCCGTTTGCCAGGGTTTCAATAC 3130 ||| |||||||||||||||| ||||| ||||||||||| | | ||||||||||||| | Sbjct 88223 -AATTGATACAAACCCACTGGCACTGCGATCGCCAGAGCTGCCTTCCAGGGTTTCAATCC 88281 Query 3131 CTATTGAACAATTATGCTCTATCAGTAGGGTTAGAGTAAGAAAATGCAGAGATTATCATT 3190 ||||||| ||| || ||||| | | | || ||||| |||||| ||||||||||||||| Sbjct 88282 CTATTGAGAAATCATACTCTA-CGGGAAGGCAAGAGTGAGAAAAAGCAGAGATTATCATT 88340 Query 3191 TATCCATTTATTGATCTTTAAAACTGACAGTAGTAGGCGAGTATGTTGATATGTTAGGCG 3250 ||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||| Sbjct 88341 TATAAATTTATTGATCTTTAAAACCGACAGTAGTAGGCGAGTA--TAAGTATGTTAGGCG 88398 Score = 262 bits (290), Expect = 1e-66 Identities = 275/358 (77%), Gaps = 35/358 (10%) Strand=Plus/Plus Query 1194 AACGGTCAGCATCCATCAGTACCGAGCGAAAGAATGCATAAAGGT----------AGTCA 1243 ||| |||||||||||||||||||||||||||||| |||| |||| || || Sbjct 87693 AACAGTCAGCATCCATCAGTACCGAGCGAAAGAACGCATCAAGGGGAAAGACTCAAGCCA 87752 Query 1244 TTGAAAGACTCAAGCCGAACAGGTAGTTATGCATCGCCTCCGTCTGGACTGCAGAGTCCA 1303 | ||||||||| || |||||||| ||||||| |||||| ||| || | ||||| | Sbjct 87753 TAGAAAGACTCGAGTGGAACAGGTGGTTATGCCCTGCCTCCTTCTAGATTTCAGAGCCTC 87812 Query 1304 ATACATTACGGACTTTA---TAT---CACTAAAGT----------GCATC----AGTACC 1343 ||||||||| |||||| ||| || ||| | ||||| |||||| Sbjct 87813 ATACATTACAGACTTTGCGGTATGTGCATAAAAATCTAACGGTCAGCATCTATCAGTACC 87872 Query 1344 GAACCAATGAATGCGTCAAGGTAAACATT-AGATACTTGAGCCAATCAGGTGGTTACGCC 1402 ||||||| |||||| ||||| ||| |||| | | |||| |||||| |||||| ||| ||| Sbjct 87873 GAACCAAAGAATGCATCAAGATAAGCATTGACAGACTTAAGCCAAACAGGTGCTTATGCC 87932 Query 1403 CCGCCCCTCTTCCTTTCCTTATCAGCGTGGAGTGGAGGGGATAAAGCATTTGTTTACTTT 1462 | |||||| |||| | |||||||| ||||||||||||||||| || |||||||||||| Sbjct 87933 C-GCCCCT--TCCTCTTCTTATCAGAGTGGAGTGGAGGGGATAG-GCCTTTGTTTACTTT 87988 Query 1463 AACAAATCTACACTGTTTTAAGTCTAGCGTGTAGCAACCAGACCCTGTTCTAACGCTA 1520 | ||||||||| |||| ||||||||||| ||||||||||| |||||| |||||||| Sbjct 87989 AGCAAATCTACTCTGTGTTAAGTCTAGCCTGTAGCAACCATACCCTGCGTTAACGCTA 88046 Score = 210 bits (232), Expect = 5e-51 Identities = 162/190 (85%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 2751 TAAGGCTGCAAGCGAAGTTGCAAAACGTGTTCAGAGCCTACGAAGATCGTGTCGATTGCA 2810 ||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| ||| Sbjct 88116 TAAGGCTTCAAGCAAAGTGGCAA--CGTGTTCAGAGCCTACGAAGATCGTGTCGATAGCA 88173 Query 2811 TCTCCTACCTACTTTTTATATGTTAGACGACTTATCTATATGTTTCATACAATTGATACA 2870 ||||||| ||| |||| ||||| || | |||| |||||||| ||| ||||||||||| Sbjct 88174 TCTCCTATCTATTTTTAATATGGTAACCAGCTTA-CTATATGTCCCATGCAATTGATACA 88232 Query 2871 AACCCACTGGAACTGCAATCGTCAGAGCTGGTTGCCGGGGTTTCAATACCTATTGAAAAA 2930 |||||||||| ||||| |||| |||||||| | || |||||||||| |||||||| ||| Sbjct 88233 AACCCACTGGCACTGCGATCGCCAGAGCTGCCTTCCAGGGTTTCAATCCCTATTGAGAAA 88292 Query 2931 TCATGCTCTA 2940 |||| ||||| Sbjct 88293 TCATACTCTA 88302 Score = 107 bits (118), Expect = 5e-20 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1518 CTATTTACTTTTCATATGTTAACTAACTTACCATATGTTTCATGCAATTGATACAAACCT 1577 |||| || |||| ||||| |||| | ||||| |||||| ||||||||||||||||||| Sbjct 88178 CTATCTATTTTTAATATGGTAACCAGCTTACTATATGTCCCATGCAATTGATACAAACCC 88237 Query 1578 ACTGGAACTGCAATCGCCAGAGTTGGTTGCCAGAGTTTCAAT 1619 ||||| ||||| |||||||||| || | |||| |||||||| Sbjct 88238 ACTGGCACTGCGATCGCCAGAGCTGCCTTCCAGGGTTTCAAT 88279 Score = 95.1 bits (104), Expect = 3e-16 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1194 AACGGTCAGCATCCATCAGTACCGAGCGAAAGAATGCATAAAGGTAGTCATTGAAAGACT 1253 ||||||||||||| ||||||||||| | ||||||||||| ||| || |||||| ||||| Sbjct 87850 AACGGTCAGCATCTATCAGTACCGAACCAAAGAATGCATCAAGATAAGCATTGACAGACT 87909 Query 1254 CAAGCCGAACAGGTAGTTATGC 1275 ||||| ||||||| |||||| Sbjct 87910 TAAGCCAAACAGGTGCTTATGC 87931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12262138666845