Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008973.1 Length=4180 Score E Sequences producing significant alignments: (Bits) Value seq3364 551 1e-153 >seq3364 Length=54413 Score = 551 bits (610), Expect = 1e-153 Identities = 462/563 (82%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 952 ATACAGTCAGTGACATGAGAGCGTATGGTCCATAACTTTAAAATTAAGCATCTAGGCAAG 1011 ||||||||| ||||| | |||||| |||| ||||||| ||||||||||||||||| ||| Sbjct 47185 ATACAGTCAATGACACGGTAGCGTACGGTCTATAACTTCAAAATTAAGCATCTAGGTAAG 47126 Query 1012 GCAAGGGTGATGTATTCGTATTCAGTGATGACGATATTATAGTGCATAGAGGTCAGATGC 1071 |||||||| | | ||||||| ||||||||| ||| |||||||||||| |||||||||| Sbjct 47125 GCAAGGGTACTATTTTCGTATCCAGTGATGAAGATTCTATAGTGCATAGGGGTCAGATGC 47066 Query 1072 ATTTGCAAAAATTTCTACCTGTTTTGCATGTGACACCTTGAAGGTGCTATGAATATGAGT 1131 |||| | ||||||| |||| ||||| ||||| | ||| || ||| ||||| |||| || Sbjct 47065 ATTTCCGAAAATTTTGACCTATTTTGTATGTGCCGCCTCTAAAGTGATATGAGTATGGGT 47006 Query 1132 AAAAGCAGCAGGTAACGTGAACTGCTAACGGCCGTGGCATCAGCGTCCAAGCTGGGGACG 1191 |||||| | || |||| |||| ||||| |||||||| |||||||||||| || Sbjct 47005 CAAAGCAA---GCAATATGAATTGCTGG-GGCCGCAGCATCAGCATCCAAGCTGGGGGCG 46950 Query 1192 AATTATCAGAAATCTACAGCTCACGTTTTCACGGAATGACACTTAGAACGCCTAGAACAA 1251 |||| |||||| |||||||||||||| |||| ||| || || ||||||||||||||||| Sbjct 46949 AATTGCCAGAAACCTACAGCTCACGTTCTCACAGAACGATACCTAGAACGCCTAGAACAA 46890 Query 1252 ACAGACTTCTTGTAGAATTATCTGCTTATCGTTGGCATGCAGCAGTCACCTGCATCTCGT 1311 ||| | ||||||||||||||||||||| |||| |||||||| |||||| ||||||| | Sbjct 46889 ACATAATTCTTGTAGAATTATCTGCTTT--GTTGCCATGCAGCGGTCACCCGCATCTCAT 46832 Query 1312 AGGCCATACAGCGCTTCACCACTTTTGCATAATGTAAGCATGACGTTGGACTGCAGCGGA 1371 |||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||| Sbjct 46831 AGGCCATACACCGCTTTGCCACTTTTGCATAATGTGAGCATGACGCTGGACTGCAGCGCT 46772 Query 1372 GCATTCACAACAGGCACTCACAAGACCCACTACTCCTAGATTTGAAGTTATTTTTACAAC 1431 ||||||| | | ||||||||||||| |||||| | ||| | |||||||| ||||| ||| Sbjct 46771 GCATTCATAGCGGGCACTCACAAGATCCACTAGTGCTATAATTGAAGTTCTTTTTCAAAC 46712 Query 1432 AGAGGTACTAAAGCGTGATGATACCTATAAGCGCAGAGAGCACCTAAACATCGGCTGGCT 1491 || ||||||||| | ||||||||||||||| || | | | ||||| ||| |||| Sbjct 46711 AGGAGTACTAAAGTGGGATGATACCTATAAGTGCGACGTGTATCTAAATATC----GGCT 46656 Query 1492 GACGTGGTCGTAGCATTGTTTTT 1514 ||||||||| ||||||| |||| Sbjct 46655 GACGTGGTCTCAGCATTGCTTTT 46633 Score = 86.0 bits (94), Expect = 2e-13 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 3343 TACGTGCTTAATAGTTATGCTTTACCTGTGTACTAAAGGTACAAACTTTTGAACAAGTTT 3402 || ||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||| Sbjct 46426 TATGTGCTTAATAGGTATGTTTTACCTGTATACTAAAGGTACAAACTTTTGAACTGCTTT 46367 Query 3403 TCACGATGAGTGTCCAACATTCCTATT 3429 || | ||| || || |||| |||| Sbjct 46366 TCCCTGTGAATGCCCGGCATTTATATT 46340 Score = 77.0 bits (84), Expect = 9e-11 Identities = 93/127 (73%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 3203 GCTTCCTTGACATGCAGCAGTTACCCGCGTTTGGTAGGCCATACACAACTTTTCTACGTA 3262 |||| ||| |||||||| || |||||| | | |||||||||||| |||| | || | Sbjct 46866 GCTTTGTTGCCATGCAGCGGTCACCCGCATCTCATAGGCCATACACCGCTTTGCCACTTT 46807 Query 3263 TACATAATGTAAGCACAACGCCAAACTGCAGTGCAGTACAAGTAGCGGATACTAACAACA 3322 | |||||||| |||| |||| ||||||| || | | |||||| ||| |||| | Sbjct 46806 TGCATAATGTGAGCATGACGCTGGACTGCAGCGCTGCATTCATAGCGGGCACTCACAAGA 46747 Query 3323 GCCACTA 3329 |||||| Sbjct 46746 TCCACTA 46740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13260256919925