Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008987.1 Length=5050 Score E Sequences producing significant alignments: (Bits) Value seq22663 313 8e-82 seq3364 237 5e-59 seq422 82.4 2e-12 >seq22663 Length=1348 Score = 313 bits (346), Expect = 8e-82 Identities = 324/420 (77%), Gaps = 11/420 (3%) Strand=Plus/Minus Query 844 TGTTCCTTCGTGAACGTTGACCGTTTAGTG-CTAGCCACCGACTGTCCGCAAATAATTTT 902 ||||| |||| || ||||||||| ||||| |||||||| ||||| ||||| | | ||| Sbjct 418 TGTTCTTTCGGTAATGTTGACCGTGTAGTGTCTAGCCACTGACTGCCCGCATACCAATTT 359 Query 903 ATAGCACGCCAGTTGTTTATCATACCGAATAAAGAAAACAATACCGCGATAAATATATCC 962 ||| ||| ||||||||||||| ||||||| ||||||||||||| | ||||| |||| Sbjct 358 ATACCACTCCAGTTGTTTATCGTACCGAAAAAAGAAAACAATATAGGGATAA---TATCA 302 Query 963 CGTGGGGTTTTCCAAAAC-TCGGCCGTAGGTTATCGTTTGGCGCGTTTATCAAATCGCAT 1021 | || || ||| ||| ||| | ||||||||||||||||| | ||| ||| Sbjct 301 ATTTGGAATTCCCACAACCTCGCGTGCGGGTTATCGTTTGGCGCGGTGATCGGATCATTC 242 Query 1022 GTAAAATAGGCAATTAAATGCTAAAATATTACTGGACCACGTGAGACAAACTTTTCTTGC 1081 ||||||| | | | ||| ||||||||| || ||||||| || ||||||| | Sbjct 241 CTAAAATAAACGAGTGAATATTAAAATATTCTTGAACCACGTCAGTCAAACTTCCATCCT 182 Query 1082 TAGGGAATTAGATCATTTACAATTCATCCTACGCTACCATACCAGAGGCCCGGGAGTCAG 1141 || | || || |||||||||||||||| |||| |||||| | | ||||||||||| Sbjct 181 TATGAAAAAAGGCGATTTACAATTCATCCTGCGCTCCCATACTGGGGCCCCGGGAGTCAC 122 Query 1142 ACACGTGTTCACTCAGTCACCTTAGATCGTA--TCATACCGACGATAGAATTTACGCTAC 1199 ||||||||||| |||||| ||||||||| ||||||| |||||| || ||||||||| Sbjct 121 TCACGTGTTCACATAGTCACTATAGATCGTATCTCATACCTACGATAAAAATTACGCTAC 62 Query 1200 CATTTTGGTACATCGTTAACAAGGTTTAATTGCTGTACTGGATGCATTGTCTTAGCTCGC 1259 |||| |||||| |||||| |||||||||||||| | |||||||||||||||||||| Sbjct 61 ----TTGGGACATCGATAACAACGTTTAATTGCTGTAATCGATGCATTGTCTTAGCTCGC 6 Score = 89.7 bits (98), Expect = 2e-14 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 663 AAGAAACTCTCGATATGCTTTGTCGAAAGCCAAAAAGTCGGTGATGCTGAAAGGAGCCCC 722 |||||||| | |||||||||| ||| || || ||| | ||||||||| ||| | Sbjct 644 AAGAAACTGTTTGTATGCTTTGTTGAATTGCAGAAGTTCGCCGGGGCTGAAAGGGGCCTC 585 Query 723 ATCAGGTATAGCAGGTCCGCGGATCGTGAAGGTGTCCACCGGGAAAGTAAGTGTTGTGTC 782 | |||||| ||| ||||| |||||||| |||||||||||||| ||||| || |||| Sbjct 584 GTTGGGTATAAAAGGCCCGCGCCTCGTGAAGTTGTCCACCGGGAAACTAAGTATTCTGTC 525 Query 783 TT 784 || Sbjct 524 TT 523 >seq3364 Length=54413 Score = 237 bits (262), Expect = 5e-59 Identities = 216/269 (80%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 1268 AATAGGAATGCTGGACACTCATCGTGAAAACCCGTTTAGAAGTTTGTACCTTTAGAATAC 1327 |||| ||||| || || ||| | ||||| | ||| | |||||||||||||||| |||| Sbjct 46340 AATATAAATGCCGGGCATTCACAGGGAAAAGCAGTTCAAAAGTTTGTACCTTTAGTATAC 46399 Query 1328 AGGTAAAACATACCTATTAAACATGTACGGCATTGCATGCGTGATAAGAGCGTGTCTTAG 1387 |||||||||||||||||||| || |||||||||| |||| ||||||||||||||||| Sbjct 46400 AGGTAAAACATACCTATTAAGCACATACGGCATTGTGTGCGCGATAAGAGCGTGTCTTAA 46459 Query 1388 CAACGACAACGATGCAGATCGGCCGCAGTTCTAGTAGGGGAGAACAACTATCATGCGATG 1447 ||||||||| |||||||||||| |||||| |||||||| |||||||| ||| || Sbjct 46460 CAACGACAATGATGCAGATCGGATGCAGTTTTAGTAGGGTGAAACAACTAGTATGTGACT 46519 Query 1448 TTTGTCCGAATACTGATAACACGAAAGGTATAAATAAAATTGA-TTGGGTTTTTTCCCAA 1506 ||| ||||||||||||||||| ||| |||||| ||||| || ||| | ||||||||| Sbjct 46520 CTTGACCGAATACTGATAACACAGAAGATATAAACAAAATAGACTTGAG--TTTTCCCAA 46577 Query 1507 CA-AACTAACCGTTCGGTTACCGAGCCAC 1534 | | ||| ||| ||||| || || || Sbjct 46578 AACGAGAAACTGTTAGGTTATCGGGCGAC 46606 Score = 159 bits (176), Expect = 1e-35 Identities = 143/178 (80%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 1593 CCTTAGTCATTGCACCTTCAAGGTG-CACACACAAAACAGGTAGAAATTTTTGAAAATTT 1651 || || |||| ||| || ||| | |||| |||||| |||| ||||||| | |||| Sbjct 47008 CCATACTCATATCACTTTAGAGGCGGCACATACAAAATAGGTCAAAATTTTCGGAAATGC 47067 Query 1652 ATCTGACCCCTATGCACCATAATATCGTCATTACTGAATACGAATATATCACTCTTGCCT 1711 ||||||||||||||||| ||| ||| |||| |||| ||||||| ||| || ||||||| Sbjct 47068 ATCTGACCCCTATGCACTATAGAATCTTCATCACTGGATACGAAAATAGTACCCTTGCCT 47127 Query 1712 TGCCTACATGCTTAATTTTGAAATTATAGACCATACGCTTTCGCGTCGTTGACTGTAT 1769 | |||| ||||||||||||||| ||||||||| |||||| || ||| |||||||||| Sbjct 47128 TACCTAGATGCTTAATTTTGAAGTTATAGACCGTACGCTACCGTGTCATTGACTGTAT 47185 >seq422 Length=143066 Score = 82.4 bits (90), Expect = 2e-12 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 1209 ACATCGTTAACAAGGTTTAATTGCTGTACTGGATGCATTGTCTTAGCTCGCCAGTCCATA 1268 |||||| |||||| |||||||||||||| | |||||||||||||||||||| | ||||| Sbjct 122637 ACATCGATAACAACGTTTAATTGCTGTAATCGATGCATTGTCTTAGCTCGCGACACCATA 122578 Query 1269 ATA 1271 ||| Sbjct 122577 ATA 122575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16043471279475