Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq955 262 7e-65 seq137 147 4e-30 >seq955 Length=106330 Score = 262 bits (290), Expect = 7e-65 Identities = 697/1051 (66%), Gaps = 43/1051 (4%) Strand=Plus/Minus Query 244460 GGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTG 244519 ||||| | ||||| | ||| | ||||||| ||| || || ||||| ||||| || | Sbjct 59640 GGGATACGCATCAGGACGAAAGCATCGGCCAATCCTTGAACACCGATTCCGATCGGCCGA 59581 Query 244520 TGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTG 244579 || ||| |||| ||| | ||||||| || | ||||| ||||| | || || | ||| Sbjct 59580 TGCCGCATGTTTGAGTTCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTG 59521 Query 244580 TTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAG 244639 || || || | || || ||| || ||| || ||||| ||| | | Sbjct 59520 TTTAGATTCTGCACGACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTATACGTTTTG 59461 Query 244640 GGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAG 244699 ||| | | ||| | || ||| || |||||| |||| || || Sbjct 59460 TCATCATTGACGA--------------ATCT-GTTCAGTGCGACGGACGCCAAATTACAC 59416 Query 244700 ACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTG 244759 ||||| || || |||| ||||||| || ||||| |||||||| |||||||| ||| Sbjct 59415 ACGGCAACTTCATCCGGCGACGTGTACTCAACGATCTCCGTGCAGAGATTACTGCATTTG 59356 Query 244760 ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAG 244819 || |||||||||| || |||||| || |||||| ||||| ||||| |||||| | Sbjct 59355 ATAGTGCCCAGGTTCTTTTGATTGCTTTTACTGTTGCATGCGTCTTTGTAAAGCATGTAT 59296 Query 244820 GGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || |||||| |||| || || | | || ||||| | | || | || Sbjct 59295 GGGGTCCCGGTTTCGACTTGCGCTTCAATGATAGCCTTCCACAAAACTTGCGCTCTCACT 59236 Query 244880 GTCCTGCGAG--CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGC 244937 ||| | | || | || || || || || || | |||||||||| | Sbjct 59235 TGCCTCACATATCGTTTCTCT-TGT-TCATATCGCTCATATAACTTCTCGAACTCGTCCC 59178 Query 244938 CCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCG 244996 ||||| ||| | |||||||| || | || ||| |||||||| ||||| |||||| | Sbjct 59177 CCCAGCAGTCGGCCAGGCCGGGACA-GTCGTGGGGGCACATGAGGCTCCATTCGCCGTTG 59119 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 || ||| || | |||||| | ||| || |||||||| | | || || || || | Sbjct 59118 CTCTCGACTCTTTTCATGAACAAGTCTGGTATCCAGAGCCCATAAAAAAGCTCTCTTGCG 59059 Query 245057 CTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGC 245116 | || ||| |||||||| ||| | || ||||| || ||||| | || ||||| Sbjct 59058 CGAACTTCCTCCTTCCCAGTGTTTTTCTTGAGATCCAAGAACTCAAATATATCCGCGTGC 58999 Query 245117 CAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATC 245176 || ||||| | |||||| |||| ||||||||| || ||||| || || ||||| || | Sbjct 58998 CACGGCTCGAGGTAGACCGCGAAGGCGCCGGGTCGTTTGTTCCCGCCTTGGTCGACGTAC 58939 Query 245177 CTCTCGAGC-GCGTTGA---AGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTT 245232 || ||| | |||| ||| ||| || | || || | |||||| ||| |||||| Sbjct 58938 CT----AGCTGTGTTGTTATAGACGCGGAGCATGGGTACGAGGCCGTTGGAGACGCCGTT 58883 Query 245233 GGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG----CCTAGTC 245288 ||| || |||||||| |||||| | | || ||| | || || || || | | Sbjct 58882 GGTTCCGGCGATGTAGGATCCCTTGGCGCGGA---TGCAG-TGTACGTGAACGCCGATAC 58827 Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGC 245348 |||| || ||||||||||| ||||| |||| ||||| |||||||| |||| Sbjct 58826 CGCCCGCTGATTTGGAGATGAGCGCGCAATGTTTGAGCGTGTCGTAGATGCCCTCGATGC 58767 Query 245349 TGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGT 245408 |||| ||||||| || || ||||||||||| |||||||| ||| || || Sbjct 58766 TGTCGTCCTTCATGGCGATGAGGAAGCAGGAGGAGAGCTGGGGGCGGGGCGTGGCCGCCG 58707 Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGG 245467 |||||| |||||||| ||||| || ||||| | ||| || || | |||||| | | Sbjct 58706 AGAACAGCGTGGGGCTCGCGTGCGTGAAGTA-CTTCTCTGACAGCAGGTTGTACGTGTTG 58648 Query 245468 --AGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 ||| || |||||||| |||||||| || Sbjct 58647 ATAGCGGA--GTCGATGTCCTCGCCGTGAAT 58619 >seq137 Length=194913 Score = 147 bits (162), Expect = 4e-30 Identities = 154/197 (78%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||| |||||||| |||| ||| |||||||||||||||||||||||||| | Sbjct 23595 CTATTCAACGCCGTGGAGACGCTGCCGTGCGTCAAGAAGAAGGCGGACTGGGCGCTCCAG 23536 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||||| || | ||| || || ||||||||| | | || || || | ||||||| Sbjct 23535 TGGATCGGCAG-CAAGACGGCCACCTTCGGCGAGCGCATCGTGGCATTCGCATCCGTCGA 23477 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GA 42786 |||||| |||||||||||| |||||| || || |||||| | ||| | | | ||| || Sbjct 23476 GGGCATATTCTTCTCGGGCAGCTTCGCGTCTATATTCTGGATGAAG-AAACGCGGTCTGA 23418 Query 42787 TGCCCGGACTCACCTTC 42803 ||||||| || || ||| Sbjct 23417 TGCCCGGTCTGACATTC 23401 Score = 113 bits (124), Expect = 9e-20 Identities = 139/189 (74%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | ||||| |||||||| ||||| || ||||| |||||||||||| || Sbjct 27566 TTCATCAAACACGTCCTGGCTTTCTTCGCGGCCTCCGATGGCATTGTCAATGAGAACTTG 27507 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 | || ||| |||| |||||| | ||| || | |||||||| || |||||| Sbjct 27506 GTGGAGAGATTCTCTCAAGAAGTGCAGGTCACTGAAGCAAGATGCTTCTATGGATTCCAG 27447 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATC 42584 || || || ||||| || ||||| ||| ||||| | ||||||| | || |||||| Sbjct 27446 ATTGCAATGGAGAATGTACACTCAGAGATGTACTC---TCTGCTCATCGATACTTACATC 27390 Query 42585 CTGGATCCC 42593 ||||||| Sbjct 27389 AGGGATCCC 27381 Score = 87.8 bits (96), Expect = 3e-12 Identities = 136/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| ||||| | ||||| || ||||| ||||| | || ||| || ||||| | Sbjct 22227 AGGGTCTGCACACAGACTTCGCTTGCCTGATGTTC---AAACATCTCGTCCAGAAGCCTT 22171 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | ||| |||| || | | || | | ||| ||||| | || ||| |||||||||||| Sbjct 22170 CCAAGAAGCGCGTGCTGCAGATAGTGAAGGACGCCGTCGTCATAGAGCAGGAGTTCCTCA 22111 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | | |||| |||||| ||| | ||||||||| ||| ||||||| | |||||| Sbjct 22110 CTGACGCGCTCCCCGTGCGGCTGCTGGGCATGAACTGCGAGCTCATGTCGGATTACATCG 22051 Query 43009 AGTACGTCGCCGAC 43022 ||| ||| || ||| Sbjct 22050 AGTTCGTGGCGGAC 22037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944034638803760