Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1896 96.9 3e-15 seq3526 95.1 9e-15 seq1195 95.1 9e-15 seq3835 87.8 1e-12 seq964 82.4 6e-11 >seq1896 Length=105120 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 108769 TACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGAC 108828 ||||| ||| ||| ||| | || ||||| ||||| || || || |||| || |||||| Sbjct 83055 TACGCGTTCATCCTGAACGTGACCTGGCTCGTCAACTCCGCCGCCCACAAGTGGGGCGAC 82996 Query 108829 CGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTC 108888 || | |||||||| ||| || ||||| | | ||| || || |||||| Sbjct 82995 AAGCCTTACGACAAGAGCATCAAGCCCTCCGAAAATATGTCGGTCGCACTCTTCGCTCTC 82936 Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 |||||||| | || |||||||||||| ||||||| ||||||||| | || ||| | Sbjct 82935 GGCGAGGGTTTCCATAACTACCACCACACATTCCCCTGGGACTACAAGACAGCTGAGCTC 82876 Query 108949 GGGAA---CGACTTTAATTTCACC 108969 ||||| | | |||| |||||| Sbjct 82875 GGGAATACCCGCCTTAACTTCACC 82852 >seq3526 Length=52949 Score = 95.1 bits (104), Expect = 9e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 108446 GACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACA 108505 |||||||||| ||| ||||||| || ||| | || || ||||||||||| || | Sbjct 16541 GACAGAACACAATCTACGAGTGGGTCAGAGACCACCGCGTCCATCACAAGTACTCCGAGA 16482 Query 108506 CGACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCA 108565 ||| || || || ||| |||| ||| | ||||||| ||| | ||||| || ||||| | Sbjct 16481 GGACAGCGGATCCCCACGACGCAAACCGAGGGTTCTTCTTCGCACACGTCGGCTGGCTGA 16422 Query 108566 TGATGACCAAGGACCCCGACGTGAT 108590 |||||| ||| |||| ||||| || Sbjct 16421 TGATGAAGAAGCACCCTGACGTTAT 16397 >seq1195 Length=97739 Score = 95.1 bits (104), Expect = 9e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 108884 CTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCG 108943 || ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 46501 CTTTCGGCGAAGGATGGCATAACTACCACCACGTGTTCCCTTACGACTACAAGGCCGCCG 46442 Query 108944 AG 108945 || Sbjct 46441 AG 46440 >seq3835 Length=48697 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 |||||||| |||||||| || ||| || || || || |||| || |||||||| ||| Sbjct 23427 CCGTCGCGGCCGGCCCTGCCCGCCTCCTGGTAGTACCCCTCCACGGACTTGGGCATGCTG 23368 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGAA 118298 || || || || |||||||||| | || || | ||||| ||||||||||| || | | Sbjct 23367 TGGTGGATGACGTACCGCACGTCCGCCTTGTCCACACCCATTCCGAACGCTATAGTAGCA 23308 Query 118299 CATATC 118304 || ||| Sbjct 23307 CAGATC 23302 >seq964 Length=104274 Score = 82.4 bits (90), Expect = 6e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||||||||| |||||||||||||||||||||||||| | ||||||||||| || ||| Sbjct 85474 TCGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCGTGGGACTACAAGGCAGCAGAGC 85533 Query 108947 TGGGGAAC 108954 | || ||| Sbjct 85534 TAGGAAAC 85541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381652751662344