Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq4530 98.7 7e-16 >seq4530 Length=43051 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| |||||||||||| || | ||| || || || || || || || | | Sbjct 12779 CCACCACGCAGACGCAGTACCAAGTGTAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAC 12838 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| |||| || | | |||||| |||| ||| Sbjct 12839 AGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGGA 12898 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| || | || | | || || | ||| || Sbjct 12899 ATGCCTTCTTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTATCGGAAGCTTCAACC 12958 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| |||||||| || ||||| ||||||||||||||||| Sbjct 12959 TCAAGAGTAATGGTTTTACCAGTCAAAGTCTTTACGAAGATCTGCAT 13005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||| ||| ||||| | || ||||| || || || || |||| | Sbjct 12322 CCACCTCGAAGGCGCAATACTAAATGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAC 12381 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || |||| ||| || ||| | || || | ||||||||| || | ||| Sbjct 12382 AGTGTGCGTCCGTCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGG 12441 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||||| || | | || || | ||| || Sbjct 12442 ATGCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCAATCGTATCGGAAGCTTCAACC 12501 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || || || || ||||| ||||||||||||||||| Sbjct 12502 TCAAGTGTAATGGTCTTGCCAGTCAAAGTCTTTACGAAGATCTGCAT 12548 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||||| ||| || || | || ||||| || || || || || | | Sbjct 13007 CCACCGCGCAGACGCAATACTAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGAC 13066 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || |||| ||| || ||| | || || | ||||||||| || | ||| Sbjct 13067 AGTGTGCGTCCGTCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGG 13126 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||||| || | | || || | ||| || Sbjct 13127 ATGCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCAATCGTATCGGAAGCTTCAACC 13186 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || || || || ||||| ||||||||||||||||| Sbjct 13187 TCAAGTGTAATGGTCTTGCCAGTCAAAGTCTTTACGAAGATCTGCAT 13233 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| |||||||||||| || | ||| ||| || || || || || || | | Sbjct 13919 CCACCACGCAGACGCAGTACCAAGTGTAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAC 13978 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| |||| || | | |||||| || | ||| Sbjct 13979 AGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 14038 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| || || ||| | || | | || || || || || Sbjct 14039 ATGCCCTCTTTGTCCTGGATCTTAGCTTTTACATTCTCGATGGTATCAGCAGGCTCGACC 14098 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || ||||| || || || || |||||||||||||| Sbjct 14099 TCCAAAGTGATGGTCTTACCAGTCAACGTCTTCACGAAGATCTGCAT 14145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347260369737833