Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq955 132 5e-26 seq4 98.7 1e-15 seq137 87.8 2e-12 >seq955 Length=106330 Score = 132 bits (146), Expect = 5e-26 Identities = 895/1438 (62%), Gaps = 34/1438 (2%) Strand=Plus/Minus Query 47022 TAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTA 47081 |||||||| ||||| || ||||| | ||||| | | || || || ||||||||| Sbjct 60300 TAATACATGCCAGTTTTCAAACCCATTTTCCATGCGTGAAAGTGAATTGATGTTAATTTA 60241 Query 47082 GAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCT 47141 ||| | ||||| | | |||||| || | || || ||||| || ||||| || ||| Sbjct 60240 CCATAGTTGGGTTCAGCCACATGAATGTTGAATGACTGGCTCTGGTCTATAAAAGCCCCT 60181 Query 47142 CTATCAGCTGCCATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAA 47199 | |||||||||| |||| || | ||| || |||||||| ||||| || || | Sbjct 60180 CGATCAGCTGCC--ATCTGAATGCTCGTCTTGACTGAAATCTCCCAGACTGTCTTGTACA 60123 Query 47200 TTTGTTTAATGTCTTCTGGG---AGATT-AGTATTTTGAATAGATCCTCCgttttctata 47255 || | | || |||| |||| || || | ||||||| | |||||| ||| | || Sbjct 60122 ATTCTCTTATTTCTT-TGGGAATAGCTTCAATATTTTGGACAGATCCATTGTTGTGAATG 60064 Query 47256 attttgttttttaattcatttgacca-aagt---tttcgttcagttaatgtttttaaAAG 47311 ||| |||||| | || | ||| |||| ||| |||| | | | || Sbjct 60063 ATTAGGTTTTTCATATCTTCATCCCACAAGTCCGCCTCGGTCAGAT----CTCGCAGCAG 60008 Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 |||| | || || | || || || || || || || || || || || ||| || Sbjct 60007 ATGATGGTTCACGACCTGGAACTCGCCCGACAGGACCCTGCGCTGGTAGATGTTAGACGT 59948 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 | | || || | || || ||||| || | ||||| || || || || || ||||| | Sbjct 59947 AAAAGGCTCGAAGGACTCGTTATTGCCGAGGATTTGTGCGGTGGAGGCGGTGGGCATCGG 59888 Query 47432 TGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCC 47490 ||| | ||| ||| | |||| | |||| ||| || | || Sbjct 59887 TGCTAATAA-GAGCGAGTTTCGGAGACCATGTTTAGCGATTTTTTCTTTGAGAGCACCCC 59829 Query 47491 AATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTA 47550 | ||||| || |||| || ||||| | || ||||| | || || | || | Sbjct 59828 AGTCCCATAGGTCTGTGGGCGTTTTGTTCCACATGTCGTATTGCAAGATGCCCTGGCTCA 59769 Query 47551 TCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTT 47610 |||| | || || |||| |||| || | | |||||| || || ||||||| Sbjct 59768 CCGGACAGCCCGGGTAAGTTTCATAAACGCCAATTTTCTCAGCGAGCTCGCAGCTTGCTT 59709 Query 47611 CCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATG 47670 | || |||| ||| || || ||||| || || | | || | || |||| || Sbjct 59708 CTAACGCACCATAGTAAATGGTTTCGAAAATCTGTTGATTCAACTTGATTGCAGCTTCAC 59649 Query 47671 ATTCA-AAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCA 47729 |||| | ||||| || | ||| ||||||||||||||||| || || Sbjct 59648 TTTCATACGGGATACGCATCAGGACGAAA-GCATCGGCCAATCCTTGAACACCGATTCCG 59590 Query 47730 ATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCT 47789 || || | ||| | || || || |||||||| | || || ||| | ||| Sbjct 59589 ATCGGCCGATGCCGCATGTTTGAGTTCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCT 59530 Query 47790 ATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCA 47849 || ||||| |||||| | |||| ||| || | ||| | | Sbjct 59529 ATGATTTTGTTTAGATTCTGCACGACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTA 59470 Query 47850 AAC---TTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCT 47906 || |||| || | || || || || ||||| | || || | |||||| || || Sbjct 59469 TACGTTTTGTCATCATTGACGAATCTGTTCAGTGCGACGGACGCCAAATTACACACGGCA 59410 Query 47907 ACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTA 47966 || |||| || || || | | || || | || ||||||| ||||||||||| Sbjct 59409 ACTTCATCCGGCGACGTGTACTCAACGATCTCCGTGCAGAGATTACTGCATTTGATAGTG 59350 Query 47967 CCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTT 48026 |||| || | ||||| | |||| |||||||| ||||||||||| | || || Sbjct 59349 CCCAGGTTCTTTTGATTGCTTTTACTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTC 59290 Query 48027 CCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC-CTTTATAACAGC 48085 || ||||| | || | ||||||||||| |||| ||| || || || | | Sbjct 59289 CCGGTTTCGACTTGCGCTTCAATGATAGCCTTCC--ACAAAACTTGCGCTCTCACTTGCC 59232 Query 48086 TC---TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATA 48142 || || | | || || ||||| ||| |||||||||||| || || ||||| | Sbjct 59231 TCACATATCGT--TTCTCTTGTTCATATCGCTCATATAACTTCTCGAACTCGTCCCCCCA 59174 Query 48143 CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTT 48202 | | | || ||||| || | || ||||| | ||| || | | | | Sbjct 59173 GCAGTCGGCCAGGCCGGGACAGTCGTGGGGGCACATGAGGCTCCATTCGCCGTTGCTCTC 59114 Query 48203 TACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTTA 48261 ||||| |||| || | ||||||||||| || | ||||| || || || | | | Sbjct 59113 GACTCTTTTCATGAACAAGTCTGGTATCCAGAG-CCCATAAAAAAGCTCTCTTGCGCGAA 59055 Query 48262 GTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 ||| || || ||| | || | || || || | || || | |||||| || ||||| | Sbjct 59054 CTTCCTCCTTCCCAGTGTTTTTCTTGAGATCCAAGAACTCAAATATATCCGCGTGCCACG 58995 Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGG 48381 | || | || | || | | || |||||||| || || ||||| || | || || | Sbjct 58994 GCTCGAGGTAGACCGCGAAGGCGCCGGGTCGTTTGTTCCCGCCTTGGTCGACGTACCTAG 58935 Query 48382 CAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439 | || |||||||| || | | ||| || || | || || || | || |||||||| Sbjct 58934 CTGTGTTGTTATAGACGCGGAGCATGGGTACGAGGCCGTTGGAGACGCCGTTGGTTCC 58877 >seq4 Length=362500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 295/452 (65%), Gaps = 5/452 (1%) Strand=Plus/Minus Query 136649 CCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGA 136708 || |||||||| ||| | || |||| || || | ||| | ||||| | |||||||||| Sbjct 26005 CCGATGTTGGCTGAAGCCTGCAAATCCGTTGAAATGGCAATGAAAAAATGTCCAAATGGA 25946 Query 136709 ATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCACAAGAATGGAAACCAC 136768 || || | ||||| |||||||| || |||||||| || ||||| || || || | | | Sbjct 25945 ATGTTCTCGGAAATCAAATATGATGGTGAACGTGTGCAAGTTCATAAAAAGGGGAGCGAG 25886 Query 136769 TTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAAGTTGATTATCTTAAT 136828 ||| || ||| || | ||||| || | ||||||||| | || |||| Sbjct 25885 TTTAAATATTTCTCCCGAGCTTTAAAACCAGTTATGCCGCATAAAGTTAGTCATTTTAAG 25826 Query 136829 GAGTATATACCTAAAGCCTTT-AAAAATGTATCATCTCTTATTTTAGATTCAGAAATAGT 136887 || | ||||| |||| ||| ||| || | | | ||||| ||| | || | | Sbjct 25825 GATTTCTTACCTCAAGCGTTTCCTAAAGGTGT-GGATATGATTTTGGATGCTGAGGTTTT 25767 Query 136888 ACTAGTAGATAAAAATA---ATAAACCATTACCATTTGGCAGTTTGGGTATACATAAAAA 136944 | | || ||| |||| |||||| |||| ||||| | || ||||| || || || Sbjct 25766 AATGGTTGATGTGAATACGGGGAAACCACTACCGTTTGGTACATTAGGTATTCACAAGAA 25707 Query 136945 GAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTGTTTGTTTTTTGATGG 137004 | |||| ||| | | | ||||| | | ||| ||||| || |||| || | |||| Sbjct 25706 GTCCGAATTTAAAGGAGCTCAAGTATGTCTGTATGTGTTTGACTGCTTGTATTATAATGG 25647 Query 137005 GTTTGATATGACAGATATTCCTCTAAATGATAGACGATCGATTCTTCAAGAAATAATAGT 137064 | | ||| |||| | || | | | ||| || ||| ||||| |||| || || Sbjct 25646 GAAAGTGTTGATAGATGTACCAATTAGAAAGAGAAGAAAGATACTTCATGAAAACATGGT 25587 Query 137065 AGAAATTCCTAATAGAATAATGTTATCAGAAC 137096 ||| | | ||| | ||||| || |||| Sbjct 25586 GGAAGTCACCAATCATGTCATGTTCTCTGAAC 25555 >seq137 Length=194913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||| ||||| || | ||| || || || ||||| ||||| || || ||||||||||| Sbjct 27414 GTACATCTCTGAGTGTACATTCTCCATTGCAATCTGGAATCCATAGAAGCATCTTGCTTC 27473 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || | ||| ||||| | | ||||| || ||||| || ||||| || || ||||| Sbjct 27474 AGTGACCTGCACTTCTTGAGAGAATCTCTCCACCAAGTTCTCATTGACAATGCCATCGGA 27533 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATG 19409 || || || || || | || ||||| || || || Sbjct 27534 GGCCGCGAAGAAAGCCAGGACGTGTTTGATGAAGTG 27569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561927512885640