Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq955 132 5e-26
seq4 98.7 1e-15
seq137 87.8 2e-12
>seq955
Length=106330
Score = 132 bits (146), Expect = 5e-26
Identities = 895/1438 (62%), Gaps = 34/1438 (2%)
Strand=Plus/Minus
Query 47022 TAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTA 47081
|||||||| ||||| || ||||| | ||||| | | || || || |||||||||
Sbjct 60300 TAATACATGCCAGTTTTCAAACCCATTTTCCATGCGTGAAAGTGAATTGATGTTAATTTA 60241
Query 47082 GAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCT 47141
||| | ||||| | | |||||| || | || || ||||| || ||||| || |||
Sbjct 60240 CCATAGTTGGGTTCAGCCACATGAATGTTGAATGACTGGCTCTGGTCTATAAAAGCCCCT 60181
Query 47142 CTATCAGCTGCCATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAA 47199
| |||||||||| |||| || | ||| || |||||||| ||||| || || |
Sbjct 60180 CGATCAGCTGCC--ATCTGAATGCTCGTCTTGACTGAAATCTCCCAGACTGTCTTGTACA 60123
Query 47200 TTTGTTTAATGTCTTCTGGG---AGATT-AGTATTTTGAATAGATCCTCCgttttctata 47255
|| | | || |||| |||| || || | ||||||| | |||||| ||| | ||
Sbjct 60122 ATTCTCTTATTTCTT-TGGGAATAGCTTCAATATTTTGGACAGATCCATTGTTGTGAATG 60064
Query 47256 attttgttttttaattcatttgacca-aagt---tttcgttcagttaatgtttttaaAAG 47311
||| |||||| | || | ||| |||| ||| |||| | | | ||
Sbjct 60063 ATTAGGTTTTTCATATCTTCATCCCACAAGTCCGCCTCGGTCAGAT----CTCGCAGCAG 60008
Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371
|||| | || || | || || || || || || || || || || || ||| ||
Sbjct 60007 ATGATGGTTCACGACCTGGAACTCGCCCGACAGGACCCTGCGCTGGTAGATGTTAGACGT 59948
Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431
| | || || | || || ||||| || | ||||| || || || || || ||||| |
Sbjct 59947 AAAAGGCTCGAAGGACTCGTTATTGCCGAGGATTTGTGCGGTGGAGGCGGTGGGCATCGG 59888
Query 47432 TGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCC 47490
||| | ||| ||| | |||| | |||| ||| || | ||
Sbjct 59887 TGCTAATAA-GAGCGAGTTTCGGAGACCATGTTTAGCGATTTTTTCTTTGAGAGCACCCC 59829
Query 47491 AATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTA 47550
| ||||| || |||| || ||||| | || ||||| | || || | || |
Sbjct 59828 AGTCCCATAGGTCTGTGGGCGTTTTGTTCCACATGTCGTATTGCAAGATGCCCTGGCTCA 59769
Query 47551 TCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTT 47610
|||| | || || |||| |||| || | | |||||| || || |||||||
Sbjct 59768 CCGGACAGCCCGGGTAAGTTTCATAAACGCCAATTTTCTCAGCGAGCTCGCAGCTTGCTT 59709
Query 47611 CCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATG 47670
| || |||| ||| || || ||||| || || | | || | || |||| ||
Sbjct 59708 CTAACGCACCATAGTAAATGGTTTCGAAAATCTGTTGATTCAACTTGATTGCAGCTTCAC 59649
Query 47671 ATTCA-AAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCA 47729
|||| | ||||| || | ||| ||||||||||||||||| || ||
Sbjct 59648 TTTCATACGGGATACGCATCAGGACGAAA-GCATCGGCCAATCCTTGAACACCGATTCCG 59590
Query 47730 ATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCT 47789
|| || | ||| | || || || |||||||| | || || ||| | |||
Sbjct 59589 ATCGGCCGATGCCGCATGTTTGAGTTCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCT 59530
Query 47790 ATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCA 47849
|| ||||| |||||| | |||| ||| || | ||| | |
Sbjct 59529 ATGATTTTGTTTAGATTCTGCACGACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTA 59470
Query 47850 AAC---TTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCT 47906
|| |||| || | || || || || ||||| | || || | |||||| || ||
Sbjct 59469 TACGTTTTGTCATCATTGACGAATCTGTTCAGTGCGACGGACGCCAAATTACACACGGCA 59410
Query 47907 ACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTA 47966
|| |||| || || || | | || || | || ||||||| |||||||||||
Sbjct 59409 ACTTCATCCGGCGACGTGTACTCAACGATCTCCGTGCAGAGATTACTGCATTTGATAGTG 59350
Query 47967 CCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTT 48026
|||| || | ||||| | |||| |||||||| ||||||||||| | || ||
Sbjct 59349 CCCAGGTTCTTTTGATTGCTTTTACTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTC 59290
Query 48027 CCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC-CTTTATAACAGC 48085
|| ||||| | || | ||||||||||| |||| ||| || || || | |
Sbjct 59289 CCGGTTTCGACTTGCGCTTCAATGATAGCCTTCC--ACAAAACTTGCGCTCTCACTTGCC 59232
Query 48086 TC---TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATA 48142
|| || | | || || ||||| ||| |||||||||||| || || ||||| |
Sbjct 59231 TCACATATCGT--TTCTCTTGTTCATATCGCTCATATAACTTCTCGAACTCGTCCCCCCA 59174
Query 48143 CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTT 48202
| | | || ||||| || | || ||||| | ||| || | | | |
Sbjct 59173 GCAGTCGGCCAGGCCGGGACAGTCGTGGGGGCACATGAGGCTCCATTCGCCGTTGCTCTC 59114
Query 48203 TACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTTA 48261
||||| |||| || | ||||||||||| || | ||||| || || || | | |
Sbjct 59113 GACTCTTTTCATGAACAAGTCTGGTATCCAGAG-CCCATAAAAAAGCTCTCTTGCGCGAA 59055
Query 48262 GTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321
||| || || ||| | || | || || || | || || | |||||| || ||||| |
Sbjct 59054 CTTCCTCCTTCCCAGTGTTTTTCTTGAGATCCAAGAACTCAAATATATCCGCGTGCCACG 58995
Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGG 48381
| || | || | || | | || |||||||| || || ||||| || | || || |
Sbjct 58994 GCTCGAGGTAGACCGCGAAGGCGCCGGGTCGTTTGTTCCCGCCTTGGTCGACGTACCTAG 58935
Query 48382 CAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439
| || |||||||| || | | ||| || || | || || || | || ||||||||
Sbjct 58934 CTGTGTTGTTATAGACGCGGAGCATGGGTACGAGGCCGTTGGAGACGCCGTTGGTTCC 58877
>seq4
Length=362500
Score = 98.7 bits (108), Expect = 1e-15
Identities = 295/452 (65%), Gaps = 5/452 (1%)
Strand=Plus/Minus
Query 136649 CCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGA 136708
|| |||||||| ||| | || |||| || || | ||| | ||||| | ||||||||||
Sbjct 26005 CCGATGTTGGCTGAAGCCTGCAAATCCGTTGAAATGGCAATGAAAAAATGTCCAAATGGA 25946
Query 136709 ATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCACAAGAATGGAAACCAC 136768
|| || | ||||| |||||||| || |||||||| || ||||| || || || | | |
Sbjct 25945 ATGTTCTCGGAAATCAAATATGATGGTGAACGTGTGCAAGTTCATAAAAAGGGGAGCGAG 25886
Query 136769 TTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAAGTTGATTATCTTAAT 136828
||| || ||| || | ||||| || | ||||||||| | || ||||
Sbjct 25885 TTTAAATATTTCTCCCGAGCTTTAAAACCAGTTATGCCGCATAAAGTTAGTCATTTTAAG 25826
Query 136829 GAGTATATACCTAAAGCCTTT-AAAAATGTATCATCTCTTATTTTAGATTCAGAAATAGT 136887
|| | ||||| |||| ||| ||| || | | | ||||| ||| | || | |
Sbjct 25825 GATTTCTTACCTCAAGCGTTTCCTAAAGGTGT-GGATATGATTTTGGATGCTGAGGTTTT 25767
Query 136888 ACTAGTAGATAAAAATA---ATAAACCATTACCATTTGGCAGTTTGGGTATACATAAAAA 136944
| | || ||| |||| |||||| |||| ||||| | || ||||| || || ||
Sbjct 25766 AATGGTTGATGTGAATACGGGGAAACCACTACCGTTTGGTACATTAGGTATTCACAAGAA 25707
Query 136945 GAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTGTTTGTTTTTTGATGG 137004
| |||| ||| | | | ||||| | | ||| ||||| || |||| || | ||||
Sbjct 25706 GTCCGAATTTAAAGGAGCTCAAGTATGTCTGTATGTGTTTGACTGCTTGTATTATAATGG 25647
Query 137005 GTTTGATATGACAGATATTCCTCTAAATGATAGACGATCGATTCTTCAAGAAATAATAGT 137064
| | ||| |||| | || | | | ||| || ||| ||||| |||| || ||
Sbjct 25646 GAAAGTGTTGATAGATGTACCAATTAGAAAGAGAAGAAAGATACTTCATGAAAACATGGT 25587
Query 137065 AGAAATTCCTAATAGAATAATGTTATCAGAAC 137096
||| | | ||| | ||||| || ||||
Sbjct 25586 GGAAGTCACCAATCATGTCATGTTCTCTGAAC 25555
>seq137
Length=194913
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313
|||||| ||||| || | ||| || || || ||||| ||||| || || |||||||||||
Sbjct 27414 GTACATCTCTGAGTGTACATTCTCCATTGCAATCTGGAATCCATAGAAGCATCTTGCTTC 27473
Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373
|| | ||| ||||| | | ||||| || ||||| || ||||| || || |||||
Sbjct 27474 AGTGACCTGCACTTCTTGAGAGAATCTCTCCACCAAGTTCTCATTGACAATGCCATCGGA 27533
Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATG 19409
|| || || || || | || ||||| || || ||
Sbjct 27534 GGCCGCGAAGAAAGCCAGGACGTGTTTGATGAAGTG 27569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561927512885640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |