Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4530 122 1e-22 seq3664 89.7 8e-13 >seq4530 Length=43051 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| | ||||| |||||||| || || ||||| || | ||| Sbjct 12320 ATGCAAATTTTCGTTAAAACTCTAACTGGCAAAACTATAACTTTGGAAGTTGAGGCCTCT 12261 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| ||||| || ||||||||||| || |||||||| || Sbjct 12260 GACACTATTGAGAACGTAAAAGCCAAAATCCAGGATAAAGAAGGTATTCCTCCAGACCAG 12201 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| || || |||||||| |||||| | ||| |||| || || || Sbjct 12200 CAGAGACTTATTTTCGCTGGCAAGCAGCTAGAAGATGGACGCACTCTATCTGACTACAAC 12141 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| | || ||||| || ||| Sbjct 12140 ATTCAGAAAGAATCAACCCTTCACTTGGTG 12111 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | |||||| ||||||| || || || ||| | || || |||| ||| Sbjct 13689 ATGCAGATCTTCGTAAAAACACTGACTGGCAAGACAATCACACTTGAGGTTGAAGCTTCA 13630 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| || || || |||||||| || || || || Sbjct 13629 GATACCATTGAGAATGTAAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 13570 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||| || ||||| |||||| | | || | ||||| || || Sbjct 13569 CAGAGACTTATCTTTGCCGGAAAACAGCTAGAAGATGGCCGCACACTGTCAGACTACAAC 13510 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| |||| ||||||||||| || Sbjct 13509 ATTCAGAAAGAGTCGACCCTTCATTTAGTATT 13478 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||| ||||||| || || || || | || || || | || Sbjct 12092 ATGCAGATCTTTGTAAAAACACTGACTGGCAAGACCATCACTCTTGAGGTAGAGGCCTCC 12033 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||||| ||||||||||| || || |||||||| || Sbjct 12032 GATACAATTGAGAATGTAAAAGCCAAAATCCAAGATAAAGAGGGTATTCCTCCAGACCAG 11973 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||||| |||||| | || ||||| || || || Sbjct 11972 CAGAGACTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCTTATCGGACTACAAC 11913 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || ||||| || ||| Sbjct 11912 ATTCAGAAAGAGTCAACCCTTCACTTGGTG 11883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| || || |||||| | || || |||| ||| Sbjct 12548 ATGCAGATCTTCGTAAAGACTTTGACTGGCAAGACCATTACACTTGAGGTTGAAGCTTCC 12489 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| |||||| || || || |||||||| || ||||| || Sbjct 12488 GATACGATTGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 12429 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||||| ||||| || ||||| | || | || || || || Sbjct 12428 CAGCGTCTTATCTTCGCCGGAAAGCAACTGGAAGACGGACGCACACTGTCCGACTACAAC 12369 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| |||||||||||||||| || Sbjct 12368 ATTCAGAAAGAGTCGACGCTTCATTTAGTATT 12337 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| ||||| ||||| | || || |||| ||| Sbjct 13005 ATGCAGATCTTCGTAAAGACTTTGACTGGTAAAACCATTACTCTTGAGGTTGAAGCTTCC 12946 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| || || ||||||||||| || || || || Sbjct 12945 GATACCATTGAGAATGTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCGGACCAG 12886 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||| || ||||| |||||| | | || | ||||| || || Sbjct 12885 CAGAGACTTATCTTTGCCGGAAAACAGCTAGAAGATGGCCGCACACTGTCAGACTACAAC 12826 Query 156003 AT 156004 || Sbjct 12825 AT 12824 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || |||||||| || || || ||| | || || |||| ||| Sbjct 12777 ATGCAGATCTTCGTTAAGACCTTGACTGGCAAGACCATCACACTTGAGGTTGAAGCTTCC 12718 Query 155883 GATAATATTTTAAACGTGAAAAAT-AAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || ||| ||||| || || || |||||||| || ||||| || Sbjct 12717 GATACCATTGAGAATGTTAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCCCCAGACCA 12658 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | | || | ||||| ||||| || ||||| | || | || || || || Sbjct 12657 GCAGCGTCTTATCTTCGCCGGAAAGCAACTGGAAGACGGACGCACACTGTCGGACTACAA 12598 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| |||| ||||||||||| || Sbjct 12597 CATTCAGAAAGAGTCGACCCTTCATTTAGTATT 12565 >seq3664 Length=101255 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || |||| || ||||| || || || || ||||| | || Sbjct 93638 ATGCAGATATTTGTGAAGACCCTGACGGGCAAAACAATCACTTTGGAGGTCGAGGCGTCG 93697 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||||||||||| || || ||||| || ||||| ||| Sbjct 93698 GACACCATTGAGAACGTCAAGGCGAAAATACAAGACAAGGAGGGCATTCCACCAGACCAA 93757 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | || || ||||| || |||||| | || | || ||||| ||| Sbjct 93758 CAGCGTTTGATCTTCGCTGGAAAGCAACTTGAAGATGGGCGCACCCTCTCTGATTACAAT 93817 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | || ||||| || || || Sbjct 93818 ATCCAGAAAGAATCCACTCTTCACTTGGTATT 93849 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||| || ||||| || ||| | ||||| |||| ||| Sbjct 93866 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACACTCGAAGTAGAAGCTTCG 93925 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || |||||| ||||| || ||||||||||| ||||| || Sbjct 93926 GACACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAGGAAGGCATACCCCCAGACCAG 93985 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || ||||| || |||||| | | || | || || || ||| Sbjct 93986 CAGAGACTCATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACCCTCTCCGACTACAAT 94045 Query 156003 AT 156004 || Sbjct 94046 AT 94047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731635962131600