Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11207 192 9e-43 seq955 190 3e-42 seq137 111 2e-18 >seq11207 Length=11417 Score = 192 bits (212), Expect = 9e-43 Identities = 187/241 (78%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||| |||| || |||||| ||| Sbjct 5105 TGTACTTGGTGACAGCCTTGGTCCCCTCGCTGACGGCGTGCTTGGCGAGCTCGCCGGGCA 5164 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| |||||| | ||| | || | |||||| ||||||||| | Sbjct 5165 GCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGATCGTAGAGCGCTTGTTGTAGT 5224 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| | ||||||| |||| |||||||| || ||||| |||| Sbjct 5225 GCGCCAGGCGGGACGCCTCGGCGGCGATGCGTTCGAAGATGTCGTTCACGAACGAATTCA 5284 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | || ||||||| || ||| ||||| ||||||||||| ||||||| Sbjct 5285 TGATGGACATGGCCTTACTGGAGATTCCGGTGTCAGGGTGGACCTGCTTGAGAACCTTGT 5344 Query 1485710 A 1485710 | Sbjct 5345 A 5345 >seq955 Length=106330 Score = 190 bits (210), Expect = 3e-42 Identities = 200/263 (76%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| || | || |||| |||| |||||||||||||||| || ||||||||||| Sbjct 58950 TGGTCGACGTACCTAGCTGTGTTGTTATAGACGCGGAGCATGGGTACGAGGCCGTTGGAG 58891 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||| || || | ||||| ||| |||||| | ||| || || |||| Sbjct 58890 ACGCCGTTGGTTCCGGCGATGTAGGATCCCTTGGCGCGGATGCAGTGTACGTGAACGCCG 58831 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || ||||| || | ||||||||||||||||| | ||| ||||| ||||||||||||||| Sbjct 58830 ATACCGCCCGCTGATTTGGAGATGAGCGCGCAATGTTTGAGCGTGTCGTAGATGCCCTCG 58771 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || |||| |||||||| | | || ||||| || ||| || ||||| | |||| | Sbjct 58770 ATGCTGTCGTCCTTCATGGCGATGAGGAAGCAGGAGGAGAGCTGGGGGCGGGGCGTGGCC 58711 Query 2073781 GCATTGAAGAGCGTGGGCGTCGC 2073803 || ||| |||||||| |||| Sbjct 58710 GCCGAGAACAGCGTGGGGCTCGC 58688 >seq137 Length=194913 Score = 111 bits (122), Expect = 2e-18 Identities = 157/220 (71%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 794342 CTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCT 794401 ||||||| ||| ||||| || ||||| || || |||||||| || ||||| |||| Sbjct 23373 CTTCGTCACGAGAGATCATCTCATTGCTGAATGTCAGACCGGGCATCAGACCGCGTTTCT 23432 Query 794402 TGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGC 794461 | | ||| || || | ||| ||||||||||| || ||||||||||||| || || Sbjct 23433 TCATCCAGAATATAGACGCGAAGCTGCCCGAGAAGAATATGCCCTCGACGGATGCGAATG 23492 Query 794462 CGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCCA 794519 | |||| |||||| | || || |||| |||| || |||||||| | |||||| Sbjct 23493 CCACGATGCGCTCGCCGAAGGT-----GGCCGTCTTGCTGCCGATCCACTGGAGCGCCCA 23547 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 || ||||| ||| | || | |||| ||| || | |||| Sbjct 23548 GTCCGCCTTCTTCTTGACGCACGGCAGCGTCTCCACGGCG 23587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913501829951639