Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq955 183 4e-40 seq11207 158 2e-32 seq137 107 3e-17 >seq955 Length=106330 Score = 183 bits (202), Expect = 4e-40 Identities = 212/286 (74%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||| |||| |||||||| || || | |||||| |||| Sbjct 58665 TGTCAGAGAAGTACTTCACGCACGCGAGCCCCACGCTGTTCTCGGCGGCCACGCCCCGCC 58724 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || || ||||| || | | |||||||| ||| |||||||||||||| | Sbjct 58725 CCCAGCTCTCCTCCTGCTTCCTCATCGCCATGAAGGACGACAGCATCGAGGGCATCTACG 58784 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 |||||||||| || ||||||||||||||||| | || ||||| ||||| || || || Sbjct 58785 ACACGCTCAAACATTGCGCGCTCATCTCCAAATCAGCGGGCGGTATCGGCGTTCACGTAC 58844 Query 260076 ACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTG 260135 || | |||||| ||| ||||| | || || ||||||||| ||||||||||| | Sbjct 58845 ACTGCATCCGCGCCAAGGGATCCTACATCGCCGGAACCAACGGCGTCTCCAACGGCCTCG 58904 Query 260136 TGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 | |||||||| ||||| | |||| |||| || | ||||||||||| Sbjct 58905 TACCCATGCTCCGCGTCTATAACAACACAGCTAGGTACGTCGACCA 58950 >seq11207 Length=11417 Score = 158 bits (174), Expect = 2e-32 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||||||||||| ||||| |||| | ||||| ||| || Sbjct 5348 ATCTACAAGGTTCTCAAGCAGGTCCACCCTGACACCG------GAATCTCCAGTAAGGCC 5295 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| ||||| || |||||||| |||| ||||||| | ||||||| Sbjct 5294 ATGTCCATCATGAATTCGTTCGTGAACGACATCTTCGAACGCATCGCCGCCGAGGCGTCC 5235 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| |||||| | | | ||| | |||||| ||||| Sbjct 5234 CGCCTGGCGCACTACAACAAGCGCTCTACGATCACCTCCAGGGAGGTGCAGACCTCCGTG 5175 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| |||||| || |||| |||||||||| |||||| |||| Sbjct 5174 AGGCTCCTGCTGCCCGGCGAGCTCGCCAAGCACGCCGTCAGCGAGGGGACCA 5123 >seq137 Length=194913 Score = 107 bits (118), Expect = 3e-17 Identities = 161/222 (73%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 |||| | || ||| |||||| || | ||| ||||| ||||||||| | |||||||| Sbjct 23587 CGCCGTGGAGACGCTGCCGTGCGTCAAGAAGAAGGCGGACTGGGCGCTCCAGTGGATCGG 23528 Query 1456155 CA--AGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211 || | || |||| | ||| | |||||| |||| | || || | |||||||||| Sbjct 23527 CAGCAAGACGGCCAC----CTTCGGCGAGCGCATCGTGGCATTCGCATCCGTCGAGGGCA 23472 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCC-ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 | || ||||||||||| ||| ||| | || || ||| | ||||| ||||| || |||||| Sbjct 23471 TATTCTTCTCGGGCAGCTTC-GCGTCTATATTCTGGATGAAGAAACGCGGTCTGATGCCC 23413 Query 1456271 GGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312 |||| | || ||||| || | ||| ||| |||||||| Sbjct 23412 GGTC-TGACATTCAGCAATGAGATGATCTCTCGTGACGAAGT 23372 Score = 87.8 bits (96), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| || || | || |||||| ||| ||||| ||||||| |||| |||| Sbjct 28432 GAGCCACTCCTAAGGGACAACCCGCGCCGATTTGTGGTGTTCCCTATCCAGTACCCTGAC 28373 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||||||||| ||||||||| ||||| || || ||||||| |||||| || ||||| Sbjct 28372 ATCTGGGAAATGTA-CAAAAAGGCTGAGGCTTCATTCTGGACCGTCGAGGAAGTGGACCT 28314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175322646127762