Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq955 217 2e-51 >seq955 Length=106330 Score = 217 bits (240), Expect = 2e-51 Identities = 418/607 (69%), Gaps = 16/607 (3%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAG----ACATA 19173 |||||||| | ||||||| || ||||| ||| || || ||||| | || || Sbjct 58601 ATGCGAGTTTCCATCGGCATTCACGGCGAGGACATC----GACTCCGCTATCAACACGTA 58656 Query 19174 CGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTAC 19233 | ||||| || |||||| |||||||||||||| || || || ||| || | || Sbjct 58657 CAACCTGCTGTCAGAGAAGTACTTCACGCACGCGAGCCCCACGCTGTTCTCGGCGGCCAC 58716 Query 19234 GAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGG 19293 | | ||| ||| | || ||| ||||| | || |||||||| |||||||| ||||| Sbjct 58717 GCCCCGCCCCCAGCTCTCCTCCTGCTTCCTCATCGCCATGAAGGACGACAGCATCGAGGG 58776 Query 19294 CATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT 19353 ||||||||| |||||||| | ||||||| ||||||||| | | || |||||||| | Sbjct 58777 CATCTACGACACGCTCAAACATTGCGCGCTCATCTCCAAATCAGCGGGCGGTATCGGCGT 58836 Query 19354 CCAC-TGCTCGAATATCCG-GTCGAGTGGTAC-ACGAATCAATGGGACGAACGGAGTAGC 19410 ||| | | | ||||| | | || | | | || ||| || || ||||| || | Sbjct 58837 TCACGTACAC-TGCATCCGCGCCAAGGGATCCTAC--ATCGCCGGAACCAACGGCGTCTC 58893 Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470 | |||| |||| || ||||||||||||| |||||||| || ||||||||| |||| || Sbjct 58894 CAACGGCCTCGTACCCATGCTCCGCGTCTATAACAACACAGCTAGGTACGTCGACCAAGG 58953 Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530 || |||||| ||| | ||||| ||||||||||||| ||||||||||| | | Sbjct 58954 CGGGAACAAACGACCCGGCGCCTTCGCGGTCTACCTCGAGCCGTGGCACGCGGATATATT 59013 Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGA-CCTCT 19589 || ||| | || || ||| || | ||||| | ||| | || | | | Sbjct 59014 TGAGTTCTTGGATCTCAAGAAAAACACTGGGAAGGAGGAAGTTCGCGCAAGAGAGCTTTT 59073 Query 19590 TCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGC 19649 | | || | | ||||| || ||| | |||||| | | || |||| ||| |||||| Sbjct 59074 TTATGGGC-TCTGGATACCAGACTTGTTCATGAAAAGAGTCGAGAGCAACGGCGAATGGA 59132 Query 19650 ACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATG 19709 ||| |||||||| ||||| || || ||||| ||||| || || || | |||| | Sbjct 59133 GCCTCATGTGCCCCCACGACTGTCCCGGCCTGGCCGACTGCTGGGGGGACGAGTTCGAGA 59192 Query 19710 AGTTGTA 19716 |||| || Sbjct 59193 AGTTATA 59199 Score = 215 bits (238), Expect = 6e-51 Identities = 937/1459 (64%), Gaps = 55/1459 (4%) Strand=Plus/Minus Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGAC---GAACTCGCCGGCCAGGGTCCGGCGC 78531 ||||| || | ||| || |||| || ||| ||||||||| | |||| || |||| Sbjct 60021 AGATCTCGCAGCAGATGATGGTT---CACGACCTGGAACTCGCCCGACAGGACCCTGCGC 59965 Query 78532 AGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTC 78591 |||||||||| | ||| | |||||||| | |||||| || || | ||| || ||||| Sbjct 59964 TGGTAGATGTTAGACGTAAAAGGCTCGAAGGACTCGTTATTGCCGAGGATTTGTGCGGTG 59905 Query 78592 GAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCG 78651 |||||||| ||||| ||||| | | || || || || |||||||| | ||| | Sbjct 59904 GAGGCGGTGGGCATCGGTGCTAATAAGAGCGAGTTTCGGAGACCATGTTTAGCGATTTTT 59845 Query 78652 ACCTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGA 78705 | || || | |||||| | || | | || | ||||||||| ||| Sbjct 59844 TCTTTGAGAGCACCCCAGTCCCATAGGTCTGTGGGCGTTTTGTTCCACATGTCGTATTGC 59785 Query 78706 AGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCG 78765 | ||| |||| | | |||| | ||| | | || || ||| || | || ||| Sbjct 59784 AAGATGCCCTGGCTCACCGGACAGCCCGGGTAAGTTTCATAAACGCCAATTTTCTCAGCG 59725 Query 78766 AGTTCGCA---TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTG-TT 78821 || ||||| || || | | || | | ||| | | ||||| || | ||| || Sbjct 59724 AGCTCGCAGCTTGCTTCTAAC---GCACCATAGTAAATGGTTTCGAAAAT-CTGTTGATT 59669 Query 78822 GAGCTCGCGCGC--CTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGA---CATCG 78876 | || | || ||| | || ||| | | |||||| || || ||||| Sbjct 59668 CAACTTGATTGCAGCTTCACTT--TCATACGGGATAC---GCATCAGGACGAAAGCATCG 59614 Query 78877 GCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTT---GCTCTTTCGGGCC 78933 |||| || || || ||||| ||||||| || || |||||||| | |||| ||| Sbjct 59613 GCCAATCCTTGAACACCGATTCCGATCGGCCGATGCCGCATGTTTGAGTTCTT---GGCT 59557 Query 78934 GCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGA 78993 | | ||||||| |||||| || |||| ||| || || || ||||| | Sbjct 59556 TCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTGTTTAGATTCTGCACGACGATTTTA 59497 Query 78994 GTCACCTCGTACAATTTGGCGAAATCAAAATGATT-TCCT--TTGATGAAAGTCGGT--A 79048 || || || | | || | || | | | || || | |||| ||| || || | Sbjct 59496 GTGACTTCTTTTAGCTTCTCAAAGTTATACGTTTTGTCATCATTGACGAA--TCTGTTCA 59439 Query 79049 GGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTT 79108 | | || |||| || |||||||| || ||||| | ||| | ||| | Sbjct 59438 GTGCGACGGACGCCAAATTACACACGGCAACTTCATCCGGCGACGTGTACTCAACGATCT 59379 Query 79109 CTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTAC 79168 | ||||| | |||| | ||||| ||||| | |||||| || ||||| || ||| | Sbjct 59378 CCGTGCAGAGATTACTGCATTTGATAGTGCCCAGGTTCTTTTGATTGCTTTTACTGTTGC 59319 Query 79169 AGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA--GAACGCC 79226 | ||||| ||||| |||||| || |||||||| || || || | ||| | || ||| Sbjct 59318 ATGCGTCTTTGTAAAGCATGTATGGGGTCCCGGTTTCGACTTG-CGCTTCAATGATAGCC 59260 Query 79227 GTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCG 79286 ||| | | | | || | || | || || || || | | || | Sbjct 59259 TTCC-ACAAAACTTGCGCTCTCACTTGCCTCACATATCGTTTCTCTTGTTCATATCGCTC 59201 Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 || |||| | ||| | ||||| || |||| |||||| || || ||||| ||||| Sbjct 59200 ATATAACTTCTCGAACTCGTCCCCCCAGCAGTCGGCCAGGCCGGGACAGTCGTGGGGGCA 59141 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 ||| ||| ||| || ||| |||| || | | |||||| | ||| || ||||| || Sbjct 59140 CATGAGGCTCCATTCGCCGTTGCTCTCGACTCTTTTCATGAACAAGTCTGGTATCCAGAG 59081 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 | || || || | || | ||||| | || ||| || || | Sbjct 59080 CCCATAAAAAAGCTCTCTTGCGCGAACTTCCTCCTTCCCAGTGTTTTTCTTGAGATCCAA 59021 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 || || | || || |||||||||||||| || |||| ||||| | || || || Sbjct 59020 GAACTCAAATATATCCGCGTGCCACGGCTCGAGGTAGACCGCGAAGGCGCCGGGTCGTTT 58961 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 | ||||| |||| |||||||| || |||||||| | || ||||||||||| |||| Sbjct 58960 GTTCCCGCCTTGGTCGACGTACCTAGCTGTGTTGTTATAGACGCGGAGCATGGGTACGAG 58901 Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA 79646 ||||| || ||||||||| || ||| ||| | || | || || ||| | | | Sbjct 58900 GCCGTTGGAGACGCCGTTGGTTCCGGCGATGTAGGATCCCTTGGCGCGGATGCA-GTGTA 58842 Query 79647 -GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 ||| | ||||| || || | | ||||||||| ||||||| | |||||||| |||| Sbjct 58841 CGTGAACGCCGATACCGCCCGCTGATTTGGAGATGAGCGCGCAATGTTTGAGCGTGTCGT 58782 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765 ||||||||||||| |||||||||||| |||| ||||||||| || | ||| ||| Sbjct 58781 AGATGCCCTCGATGCTGTCGTCCTTCATGGCGATGAGGAAGCAGGAGGAGAGCTGGGGGC 58722 Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCA 79825 | ||| | || ||| || || || |||||||||||||| |||| | || || Sbjct 58721 GGGGCGTGGCCGCCGAGAACAGCGTGGGGCTCGCGTGCGTGAAGTACTTCTCTGACAGCA 58662 Query 79826 GATCGTACGTCTCCTTGA-CGCGCGG--GAGGTCGTCGCCGTGGATGCCGACCGCGACGC 79882 | | |||||| |||| ||| | || ||| |||||||| ||||||| | || | Sbjct 58661 GGTTGTACGT---GTTGATAGCGGAGTCGATGTCCTCGCCGTGAATGCCGATGGAAACTC 58605 Query 79883 GCATGAAGAGGTACTGGGG 79901 |||| | | || |||||| Sbjct 58604 GCATCAGCATGTGCTGGGG 58586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548347893895440