Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3754 96.9 2e-15 seq3664 96.9 2e-15 seq4530 84.2 2e-11 >seq3754 Length=50117 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || ||||| || ||||| || | ||||| || || ||||| |||| Sbjct 1549 GACAAAGAGGGAATTCCGCCAGACCAGCAGCGTCTGATTTTCGCTGGCAAACAGCTGGAG 1608 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| |||| |||||||||||||||||||| ||| | ||||||||| | Sbjct 1609 GACGGACGCACTCTGTCGGATTACAACATCCAAAAAGAATCCACCCTTCATTTGGTTCTT 1668 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | || ||||||| Sbjct 1669 CGTCTTCGCGGCGGCG 1684 >seq3664 Length=101255 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || ||||| || ||||| || | ||||| || || ||||| |||| Sbjct 96011 GACAAAGAGGGAATTCCGCCAGACCAGCAGCGTCTGATTTTCGCTGGCAAACAGCTGGAG 96070 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| |||| |||||||||||||||||||| ||| | ||||||||| | Sbjct 96071 GACGGACGCACTCTGTCGGATTACAACATCCAAAAAGAATCCACCCTTCATTTGGTTCTT 96130 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | || ||||||| Sbjct 96131 CGTCTTCGCGGCGGCG 96146 >seq4530 Length=43051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||| | ||||| ||| ||||| |||| || ||| || Sbjct 13005 ATGCAGATCTTCGTAAAGACTTTGACTGGTAAAACCATTACTCTTGAGGTTGAAGCTTCC 12946 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||||| ||||||||||| |||| ||| | Sbjct 12945 GATACCATTGAGAAT--GTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCGGACC 12888 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | | || |||||||||||||| | || || | |||| |||| || |||| Sbjct 12887 AGCAGAGACTTATCTTTGCCGGAAAACAGCTAGAAGATGGCCGCACACTGTCAGACTACA 12828 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || ||||| ||||| ||||||| || Sbjct 12827 ACATCCAGAAGGAGTCTACTCTACACTTGGTACTGCGTCTGCGTGGTGG 12779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355750499179527