Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4530 104 2e-17 seq3754 98.7 9e-16 seq3664 98.7 9e-16 seq1462 96.9 3e-15 >seq4530 Length=43051 Score = 104 bits (114), Expect = 2e-17 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || |||| | ||| || || ||||| ||||| |||||| Sbjct 12305 TAACGAAAATTTG--CATACCACCTCGAAGGCGCAATACTAAATGAAGCGTCGACTCTTT 12362 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || || || || |||| ||||| ||| |||| || || || || || || || ||||| Sbjct 12363 CTGAATGTTGTAGTCGGACAGTGTGCGTCCGTCTTCCAGTTGCTTTCCGGCGAAGATAAG 12422 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 |||||||||||| | ||| | || || |||||| |||||| ||| | || | | Sbjct 12423 ACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCAAT 12482 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||||| | || || || | || || | || || |||| || || || ||||| Sbjct 12483 CGTATCGGAAGCTTCAACCTCAAGTGTAATGGTCTTGCCAGTCAAAGTCTTTACGAAGAT 12542 Query 39279 TTGCAT 39284 ||||| Sbjct 12543 CTGCAT 12548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || | | ||| | |||||| || ||| ||||| || || || || | Sbjct 11638 CCACCTCTCAATCTAAGCACAAGATGTAGAGTTGACTCCTTTTGAATGTTGTAGTCTGAC 11697 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || ||||| || ||||| || || || |||||||||||||||| ||| Sbjct 11698 AGTGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGG 11757 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| |||||| || | || | | || ||| | ||| || Sbjct 11758 ATGCCTTCCTTGTCTTGGATTTTTGCCTTAACATTCTCGATTGTGTCGGAAGCCTCAACC 11817 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || || ||||| ||||| |||||||| ||||| Sbjct 11818 TCGAGTGTGATGGTCTTGCCAGTCAGTGTTTTTACAAAGATCTGCAT 11864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || ||||| || || |||||| || || || || || | ||||| ||| || Sbjct 12562 CGCAATACTAAATGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGACAGTGTGCGTCCG 12621 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || || || || || || ||||||||||||||||| | ||| | || || ||| Sbjct 12622 TCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTG 12681 Query 39190 TCCATGATTTT-CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||| | || | | |||||| | || || || | ||||| Sbjct 12682 TCCTGGATTTTGGCCTTTAACATTCTCAATGGTATCGGAAGCTTCAACCTCAAGTGTGAT 12741 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || ||||| ||||| ||||| Sbjct 12742 GGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 12777 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || || || || || |||||| || || || || || | ||||| ||| || Sbjct 13019 CGCAATACTAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGACAGTGTGCGTCCG 13078 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || || || || || || ||||||||||||||||| | ||| | || || ||| Sbjct 13079 TCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTG 13138 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||| ||| | || | | ||||||| | || || || | || || Sbjct 13139 TCCTGGATTTTAGCTTTAACATTCTCAATCGTATCGGAAGCTTCAACCTCAAGTGTAATG 13198 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || || ||||| ||||| Sbjct 13199 GTCTTGCCAGTCAAAGTCTTTACGAAGATCTGCAT 13233 >seq3754 Length=50117 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| |||||||| || || ||||| | || || ||| |||| || Sbjct 1664 ACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCC 1605 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| || || || |||||||||||||| | || | | ||||||||| | Sbjct 1604 AGCTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCTGGCGGAATTCCCTCTTTGTCTTGG 1545 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | || || | ||| || |||| || || |||| Sbjct 1544 ATCTTAGCCTTTACATTCTCAATGGTGTCAGAAGCCTCAACTTCCAAAGTTATTGTTTTG 1485 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||| ||||| Sbjct 1484 CCTGTCAGGGTCTTCACAAAGATCTGCAT 1456 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || |||||||| || || ||||||| || || || | Sbjct 986 CGCAATACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCGGAGAGGGTACGGCCA 927 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| ||||| || || || || || | ||||||||||| ||| | || || ||| Sbjct 926 TCTTCAAGTTGTTTTCCAGCGAAGATGAGTCTCTGCTGGTCGGGGGGGATGCCTTCCTTG 867 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||||| |||| || | | || || | || || || | ||||| Sbjct 866 TCTTGAATTTTAGCCTTGACGTTCTCGATGGTGTCTGAAGCTTCTACTTCGAGTGTGATG 807 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || ||||| || || |||||||||||||| Sbjct 806 GTTTTACCTGTCAGGGTCTTCACAAAGATTTGCAT 772 >seq3664 Length=101255 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| |||||||| || || ||||| | || || ||| |||| || Sbjct 96126 ACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCC 96067 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| || || || |||||||||||||| | || | | ||||||||| | Sbjct 96066 AGCTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCTGGCGGAATTCCCTCTTTGTCTTGG 96007 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | || || | ||| || |||| || || |||| Sbjct 96006 ATCTTAGCCTTTACATTCTCAATGGTGTCAGAAGCCTCAACTTCCAAAGTTATTGTTTTG 95947 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||| ||||| Sbjct 95946 CCTGTCAGGGTCTTCACAAAGATCTGCAT 95918 >seq1462 Length=89589 Score = 96.9 bits (106), Expect = 3e-15 Identities = 175/253 (69%), Gaps = 5/253 (2%) Strand=Plus/Minus Query 45585 CATGTTCGCACCCTACGATTGTGAGTTTTACACGTACGAGCCGGCGCTGCTCTCCTCGGT 45644 ||||||||| || ||| |||| |||| | || ||| |||| |||| | ||||| || Sbjct 31630 CATGTTCGCCCCGTACAATTGCACGTTTCATACCTACAAGCCTCGGCTGTTATCCTCAGT 31571 Query 45645 GGATTGCTACACGCAC-GAATGCAAGCTTTCGCATACCGTCACCACTGTCGACACTTACA 45703 || ||| ||| ||| | ||||| || || || || | || || || |||||| Sbjct 31570 GGCTTG-TACTAACACCGCCTGCAAACTGATACACACTGTGTCTACGGTAGATACTTACG 31512 Query 45704 CACCCACTGAGGGCTACAATTGGGGTGTAACCATTTATGGTAAAGCTTCATTCCTAGAt- 45762 | | | || ||||| ||||||||||||| ||| | ||||| || || | ||| Sbjct 31511 CCTCAAGCGAAGGCTATAATTGGGGTGTAAAGATTAGCGCAAAAGCATCTTTTTTCGATA 31452 Query 45763 --ttttttGAAGTTGGCGGAGAAGCGTCCACCGGCGGAGTGTATTCGTGCACTTACACCA 45820 || || || || ||||| ||||| ||||| || ||| |||||| ||| | | ||| Sbjct 31451 AGTTATTCGAGGTGGGCGGCGAAGCTTCCACAGGTGGATCGTATTCTTGCGCGTTTACCC 31392 Query 45821 AAGGAAAAACCAC 45833 |||| ||||| || Sbjct 31391 AAGGGAAAACAAC 31379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429410529520313