Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq4530 104 2e-17
seq3754 98.7 9e-16
seq3664 98.7 9e-16
seq1462 96.9 3e-15
>seq4530
Length=43051
Score = 104 bits (114), Expect = 2e-17
Identities = 171/246 (70%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098
|||| ||||||| || || |||| | ||| || || ||||| ||||| ||||||
Sbjct 12305 TAACGAAAATTTG--CATACCACCTCGAAGGCGCAATACTAAATGAAGCGTCGACTCTTT 12362
Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158
|| || || || |||| ||||| ||| |||| || || || || || || || |||||
Sbjct 12363 CTGAATGTTGTAGTCGGACAGTGTGCGTCCGTCTTCCAGTTGCTTTCCGGCGAAGATAAG 12422
Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218
|||||||||||| | ||| | || || |||||| |||||| ||| | || | |
Sbjct 12423 ACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCAAT 12482
Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278
||||||| | || || || | || || | || || |||| || || || |||||
Sbjct 12483 CGTATCGGAAGCTTCAACCTCAAGTGTAATGGTCTTGCCAGTCAAAGTCTTTACGAAGAT 12542
Query 39279 TTGCAT 39284
|||||
Sbjct 12543 CTGCAT 12548
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| ||||| || | | ||| | |||||| || ||| ||||| || || || || |
Sbjct 11638 CCACCTCTCAATCTAAGCACAAGATGTAGAGTTGACTCCTTTTGAATGTTGTAGTCTGAC 11697
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
||||| || | || ||||| || ||||| || || || |||||||||||||||| |||
Sbjct 11698 AGTGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGG 11757
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| || || ||||| |||||| || | || | | || ||| | ||| ||
Sbjct 11758 ATGCCTTCCTTGTCTTGGATTTTTGCCTTAACATTCTCGATTGTGTCGGAAGCCTCAACC 11817
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | ||||| | || || ||||| ||||| |||||||| |||||
Sbjct 11818 TCGAGTGTGATGGTCTTGCCAGTCAGTGTTTTTACAAAGATCTGCAT 11864
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/216 (69%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || || ||||| || || |||||| || || || || || | ||||| ||| ||
Sbjct 12562 CGCAATACTAAATGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGACAGTGTGCGTCCG 12621
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || || || || || || || ||||||||||||||||| | ||| | || || |||
Sbjct 12622 TCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTG 12681
Query 39190 TCCATGATTTT-CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
||| |||||| ||| | || | | |||||| | || || || | |||||
Sbjct 12682 TCCTGGATTTTGGCCTTTAACATTCTCAATGGTATCGGAAGCTTCAACCTCAAGTGTGAT 12741
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || |||| || ||||| ||||| |||||
Sbjct 12742 GGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 12777
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || || || || || || |||||| || || || || || | ||||| ||| ||
Sbjct 13019 CGCAATACTAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGACAGTGTGCGTCCG 13078
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || || || || || || || ||||||||||||||||| | ||| | || || |||
Sbjct 13079 TCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTG 13138
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
||| |||||| ||| | || | | ||||||| | || || || | || ||
Sbjct 13139 TCCTGGATTTTAGCTTTAACATTCTCAATCGTATCGGAAGCTTCAACCTCAAGTGTAATG 13198
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || |||| || || || ||||| |||||
Sbjct 13199 GTCTTGCCAGTCAAAGTCTTTACGAAGATCTGCAT 13233
>seq3754
Length=50117
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || ||| |||||||| || || ||||| | || || ||| |||| ||
Sbjct 1664 ACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCC 1605
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||||||||| || || || |||||||||||||| | || | | ||||||||| |
Sbjct 1604 AGCTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCTGGCGGAATTCCCTCTTTGTCTTGG 1545
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || || | || | | || || | ||| || |||| || || ||||
Sbjct 1544 ATCTTAGCCTTTACATTCTCAATGGTGTCAGAAGCCTCAACTTCCAAAGTTATTGTTTTG 1485
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || |||||||| |||||
Sbjct 1484 CCTGTCAGGGTCTTCACAAAGATCTGCAT 1456
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || ||||| || || || |||||||| || || ||||||| || || || |
Sbjct 986 CGCAATACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCGGAGAGGGTACGGCCA 927
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| ||||| || || || || || | ||||||||||| ||| | || || |||
Sbjct 926 TCTTCAAGTTGTTTTCCAGCGAAGATGAGTCTCTGCTGGTCGGGGGGGATGCCTTCCTTG 867
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
|| ||||| |||| || | | || || | || || || | |||||
Sbjct 866 TCTTGAATTTTAGCCTTGACGTTCTCGATGGTGTCTGAAGCTTCTACTTCGAGTGTGATG 807
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| || ||||| || || ||||||||||||||
Sbjct 806 GTTTTACCTGTCAGGGTCTTCACAAAGATTTGCAT 772
>seq3664
Length=101255
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || ||| |||||||| || || ||||| | || || ||| |||| ||
Sbjct 96126 ACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCC 96067
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||||||||| || || || |||||||||||||| | || | | ||||||||| |
Sbjct 96066 AGCTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCTGGCGGAATTCCCTCTTTGTCTTGG 96007
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || || | || | | || || | ||| || |||| || || ||||
Sbjct 96006 ATCTTAGCCTTTACATTCTCAATGGTGTCAGAAGCCTCAACTTCCAAAGTTATTGTTTTG 95947
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || |||||||| |||||
Sbjct 95946 CCTGTCAGGGTCTTCACAAAGATCTGCAT 95918
>seq1462
Length=89589
Score = 96.9 bits (106), Expect = 3e-15
Identities = 175/253 (69%), Gaps = 5/253 (2%)
Strand=Plus/Minus
Query 45585 CATGTTCGCACCCTACGATTGTGAGTTTTACACGTACGAGCCGGCGCTGCTCTCCTCGGT 45644
||||||||| || ||| |||| |||| | || ||| |||| |||| | ||||| ||
Sbjct 31630 CATGTTCGCCCCGTACAATTGCACGTTTCATACCTACAAGCCTCGGCTGTTATCCTCAGT 31571
Query 45645 GGATTGCTACACGCAC-GAATGCAAGCTTTCGCATACCGTCACCACTGTCGACACTTACA 45703
|| ||| ||| ||| | ||||| || || || || | || || || ||||||
Sbjct 31570 GGCTTG-TACTAACACCGCCTGCAAACTGATACACACTGTGTCTACGGTAGATACTTACG 31512
Query 45704 CACCCACTGAGGGCTACAATTGGGGTGTAACCATTTATGGTAAAGCTTCATTCCTAGAt- 45762
| | | || ||||| ||||||||||||| ||| | ||||| || || | |||
Sbjct 31511 CCTCAAGCGAAGGCTATAATTGGGGTGTAAAGATTAGCGCAAAAGCATCTTTTTTCGATA 31452
Query 45763 --ttttttGAAGTTGGCGGAGAAGCGTCCACCGGCGGAGTGTATTCGTGCACTTACACCA 45820
|| || || || ||||| ||||| ||||| || ||| |||||| ||| | | |||
Sbjct 31451 AGTTATTCGAGGTGGGCGGCGAAGCTTCCACAGGTGGATCGTATTCTTGCGCGTTTACCC 31392
Query 45821 AAGGAAAAACCAC 45833
|||| ||||| ||
Sbjct 31391 AAGGGAAAACAAC 31379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429410529520313
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |