Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq955 313 4e-80 seq4 132 7e-26 >seq955 Length=106330 Score = 313 bits (346), Expect = 4e-80 Identities = 1019/1572 (65%), Gaps = 18/1572 (1%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || ||||| || | || || ||||| |||||||| | ||||| ||||| ||| || Sbjct 60318 GCCGGTTTCGTCCTCAGGTAATACATGCCAGTTTTCAAACCCATTTTCCATGCGTGAAAG 60259 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || ||||| ||| ||| | || || || | |||||| || | ||||| || Sbjct 60258 TGAATTGATGTTAATTTACCATAGTTGGGTTCAGCCACATGAATGTTGAATGACTGGCTC 60199 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 || || || ||||| |||| |||||| ||||| | || | ||||| | ||| ||| Sbjct 60198 TGGTCTATAAAAGCCCCTCGATCAGCTGCCATCTGAATGCTCGTCTTGACTGAAATCTCC 60139 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG---TATTTTGAATGGAT 75634 || | || ||| | | || | | || || | |||| | | ||||||| | ||| Sbjct 60138 CAGACTGTCTTGTACAATTCTCTTATTTCTTTGGGAATAGCTTCAATATTTTGGACAGAT 60079 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAA 75694 || | || ||| || || || || |||| |||||| | |||||| | | Sbjct 60078 CCATTGTTGTGAATGATTAGGTTTTTCATATCTTCATCCCACAAGTCCGCCTCGGTCAGA 60019 Query 75695 ACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAA 75754 ||| || |||||| | || || | || || || || |||| || || || ||| Sbjct 60018 TCTCGCAGCAGATGATGGTTCACGACCTGGAACTCGCCCGACAGGACCCTGCGCTGGTAG 59959 Query 75755 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCA 75814 || ||| ||| | || || | || || || || || | ||||| || || || || Sbjct 59958 ATGTTAGACGTAAAAGGCTCGAAGGACTCGTTATTGCCGAGGATTTGTGCGGTGGAGGCG 59899 Query 75815 GTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 75874 || ||||| ||||| | || | |||| |||||||||| | |||||| ||||| Sbjct 59898 GTGGGCATCGGTGCTAATAAGAGCGAGTTTCGGAGACCATGTTTAGCGATTTTTTCTTTG 59839 Query 75875 AGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATT 75934 ||| ||| ||||| || |||| || | ||| | |||||||| | || Sbjct 59838 AGAGCACCCCAGTCCCATAGGTCTGTGGGCGTTTTGTTCCACATGTCGTATTGCAAGATG 59779 Query 75935 CCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG 75994 || | ||| | | || || ||||| ||| || || ||||| || ||| Sbjct 59778 CCCTGGCTCACCGGACAGCCCGGGTAAGTTTCATAAACGCCAATTTTCTCAGCGAGCTCG 59719 Query 75995 CAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC--TT 76052 || || || ||||||||||| || ||||| ||||||||||||| | ||| | | || Sbjct 59718 CAGCTTGCTTCTAACGCACCATAGTAAATGGTTTCGAAAATCTGTTGATTCAACTTGATT 59659 Query 76053 GC-GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111 || |||||| || ||| | || | | | || | || ||||| || | ||| ||| Sbjct 59658 GCAGCTTCA---CTTTCATACGGGATACGCATCAGGACGAAAGCATCGGCCAATCCTTGA 59602 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAA 76171 || || || || || || | ||| | | | || || | | |||||||| || ||||| Sbjct 59601 ACACCGATTCCGATCGGCCGATGCCGCATGTTTGAGTTCTTGGCTTCTGGGATCGGGTAG 59542 Query 76172 TAATTAATATCTATAATTTTATTGAGATTTCTG-ACAACTACTTTAACCACGTCCTTTAG 76230 | || | ||||| ||||| || ||||| ||| || || | |||| || || ||||| Sbjct 59541 AAGTTCACCTCTATGATTTTGTTTAGATT-CTGCACGACGATTTTAGTGACTTCTTTTAG 59483 Query 76231 TTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAG 76287 || ||| | | | ||| |||| | || || | || || || | || || | Sbjct 59482 CTTCTCAAAGTTATACGTTTTGTCATCATTGACGAATCTGTTCAGTGCGACGGACGCCAA 59423 Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347 |||||| ||||| || |||| | | || | | ||||||||||| |||||||| Sbjct 59422 ATTACACACGGCAACTTCATCCGGCGACGTGTACTCAACGATCTCCGTGCAGAGATTACT 59363 Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407 || |||||||| || || || | ||| ||||| || |||| |||| ||| || ||||| Sbjct 59362 GCATTTGATAGTGCCCAGGTTCTTTTGATTGCTTTTACTGTTGCATGCGTCTTTGTAAAG 59303 Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC 76467 | | || || || ||||| | || | ||| || |||| ||||| | ||| || Sbjct 59302 CATGTATGGGGTCCCGGTTTCGACTTGCGCTTCAATGATAGCCTTCCACAAAACTTGCGC 59243 Query 76468 TTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTC 76527 | | | | ||||| |||||| ||||||| | ||||||| || || || Sbjct 59242 TCTCACTTGCCTCACATATCGTTTCTCTTGTTCATATCGCTCATATAACTTCTCGAACTC 59183 Query 76528 ATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACC 76587 || ||||| || ||| || ||||| || | || ||||| | ||| || || Sbjct 59182 GTCCCCCCAGCAGTCGGCCAGGCCGGGACAGTCGTGGGGGCACATGAGGCTCCATTCGCC 59123 Query 76588 ATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 | || || | |||||| || | || |||||||| || || ||| || |||| Sbjct 59122 GTTGCTCTCGACTCTTTTCATGAACAAGTCTGGTATCCAGAGCCCATAAAAAAGCTCTCT 59063 Query 76648 GGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGA 76707 | | | ||| || || || || || || || ||||| | |||||| | ||||| | Sbjct 59062 TGCGCGAACTTCCTCCTTCCCAGTGTTTTTCTTGAGATCCAAGAACTCAAATATATCCGC 59003 Query 76708 ATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTAT 76767 ||||| || || || || | ||| | | || |||||||| || || || || || | Sbjct 59002 GTGCCACGGCTCGAGGTAGACCGCGAAGGCGCCGGGTCGTTTGTTCCCGCCTTGGTCGAC 58943 Query 76768 ATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATT 76827 || || || ||||| ||||| || | | ||| || | | |||||| || || || Sbjct 58942 GTACCTAGCTGTGTTGTTATAGACGCGGAGCATGGGTACGAGGCCGTTGGAGACGCCGTT 58883 Query 76828 TGTTCCAGAAATATAACTTCCACATGCACGAAT--ATTACTAATAGATAGGCCTATTCCT 76885 ||||| | || || ||| || || || | | || || | ||| || || Sbjct 58882 GGTTCCGGCGATGTAGGATCCCTTGGCGCGGATGCAGT-GTACGTGA-ACGCCGATACCG 58825 Query 76886 CCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTA 76945 || || ||| ||||| || || || |||| | ||||| ||||||||||| || || Sbjct 58824 CCCGCTGATTTGGAGATGAGCGCGCAATGTTTGAGCGTGTCGTAGATGCCCTCGATGCTG 58765 Query 76946 TCATCCATCATG 76957 || ||| ||||| Sbjct 58764 TCGTCCTTCATG 58753 >seq4 Length=362500 Score = 132 bits (146), Expect = 7e-26 Identities = 240/348 (69%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 169531 TCTGTTATGACTCCTATCAATCCTATGTTGGCCGAATCATGCGATTCTGTTAACAAGGCA 169590 ||| ||||||| || | || |||||||| ||| | ||| | || ||| | | |||| Sbjct 26026 TCTCTTATGACACCAGTTCTACCGATGTTGGCTGAAGCCTGCAAATCCGTTGAAATGGCA 25967 Query 169591 TTTAAAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGACGGTGAACGAGTGCAA 169650 | ||||||| |||| ||| ||||| | ||| |||||||||| |||||||| |||||| Sbjct 25966 ATGAAAAAATGTCCAAATGGAATGTTCTCGGAAATCAAATATGATGGTGAACGTGTGCAA 25907 Query 169651 GTTCATAAAAATAATAACAACTTTGCCTTCTTTAGTAGAAATATGAAACCAGTTTTACCA 169710 ||||||||||| | | | ||| | || || | | ||||||||| | || Sbjct 25906 GTTCATAAAAAGGGGAGCGAGTTTAAATATTTCTCCCGAGCTTTAAAACCAGTTATGCCG 25847 Query 169711 CATAAAGTTGATTATCTCAAAGAATACCTTCCTAAAGCATTTAAAAAAGCTACGTCTATT 169770 ||||||||| | || | || || | | | ||| |||| ||| |||| | | ||| Sbjct 25846 CATAAAGTTAGTCATTTTAAGGATTTCTTACCTCAAGCGTTTCCTAAAGGTGTGGATATG 25787 Query 169771 ATCTTGGATTCTGAAATTGTTCTAGTTGA--CGAACAC-AATATACCACTTCCGTTTGGA 169827 || |||||| |||| || | | ||||| ||| || | |||||| |||||||| Sbjct 25786 ATTTTGGATGCTGAGGTTTTAATGGTTGATGTGAATACGGGGAAACCACTACCGTTTGGT 25727 Query 169828 AGTTTAGGAATACACAAAAAGAAAGAATATAAA--AACTCTAATATGT 169873 | ||||| || ||||| ||| |||| |||| | ||| | ||||| Sbjct 25726 ACATTAGGTATTCACAAGAAGTCCGAATTTAAAGGAGCTCAAGTATGT 25679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712704469744320