Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq144 89.7 1e-12 seq102 89.7 1e-12 seq486 87.8 4e-12 seq118 87.8 4e-12 >seq144 Length=233880 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 127857 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 127798 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 127797 CCCACGTTGGGC 127786 >seq102 Length=293064 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | ||||| |||||||||| Sbjct 193354 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGGGGGTTCGAGC 193295 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 193294 CCCCCGTTGGGC 193283 >seq486 Length=109661 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct 42816 CTAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCT-CAGGTCGTGGGTTCG 42874 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 42875 AGCCCCACGTTGGGC 42889 >seq118 Length=272213 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 61178 TGCAAAACTATACGCTTACTGGATTTGTAAA-AATTACCGCGAGTCGTATGGAATGTTTG 61236 |||||| ||||||||||||||||| |||| || || ||||| | |||||||||| || Sbjct 111365 TGCAAAGCTATACGCTTACTGGATA-GTAACTAACTATCGCGAAGCATATGGAATGTATG 111307 Query 61237 TATGTAACTCGATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTC 61296 ||| || |||| ||||||||||| ||||| | ||||| | | ||||| || Sbjct 111306 CATGCAATGGAATTTTATTCAATCACGAAAGTCCAAGACGAGGTGAAAACTTTGTTACCA 111247 Query 61297 GTAAAATTACGAAGGCGGTTGCAAATATTTTTAACGGTGTCGAAAAATGCATGT----AT 61352 | |||||||| | || || || | || || || ||| || || | | Sbjct 111246 GAAAAATTACCCGTTCAGTAGCTAAAA---TTCAC-TTGGGACAAATTGAATATTTTGAG 111191 Query 61353 CTAGGAAACATAGACTCTAAAAGAGATTGGGGATATGC 61390 || ||||| | ||| ||||||||||||||||| |||| Sbjct 111190 CTTGGAAATTTGGACGCTAAAAGAGATTGGGGACATGC 111153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057696571215260