Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1326 125 8e-24
seq1672 104 3e-17
>seq1326
Length=48828
Score = 125 bits (138), Expect = 8e-24
Identities = 201/287 (70%), Gaps = 9/287 (3%)
Strand=Plus/Minus
Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656
||||| ||||| | || || ||||| || |||||||| | || || || |||
Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694
Query 53657 TTCAGTTTGAGAAAATCAAATTGTCCATC---TATTACAAACATGTTCAATGCAATAGAT 53713
|||| ||| |||||| || | ||| | | ||| |||| |||| |||||||||
Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634
Query 53714 GCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCAGTGCAA 53770
|||| ||| || ||||||| |||| | | | | ||| | | ||| ||||||||
Sbjct 33633 GCCAAATTGCACACGGCTATTTCATCCTTTGAA---GAATACTCGACTATTTCAGTGCAC 33577
Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830
| ||| ||| ||||||||||| | ||| || ||||| ||| ||||||||||||
Sbjct 33576 AAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCC 33517
Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877
|| || | | | |||| || |||||||| || |||||||| |||||
Sbjct 33516 TTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470
Score = 122 bits (134), Expect = 1e-22
Identities = 121/157 (77%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| |||||||||||||| || ||||||| || |||||||| || || | ||| |
Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
|||||||| || ||||||||||| ||||| |||||||| ||||| || |||| | ||||
Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250
Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 53306
||||| |||||||| | || ||||| | |||||
Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTA 34213
Score = 86.0 bits (94), Expect = 7e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837
||| |||||||| || || | || || ||||| || || || || ||||| ||||||||
Sbjct 32200 TTTCTTTGTTTCCTTATGCAAGTTAGAAACGGCAATCCTGGCAGCAAGAATCGCATAATC 32141
Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897
|||||| | |||||| |||| || || | || || | || | |||| | ||| || ||
Sbjct 32140 CGGATGGTTTGTAGTTAAAGTAGCAGCAGTCTCAGCAGCCAAATTGTCAAGTTCCACAGT 32081
Query 54898 TGTTACTCCA 54907
||| ||||||
Sbjct 32080 TGTAACTCCA 32071
>seq1672
Length=38749
Score = 104 bits (114), Expect = 3e-17
Identities = 160/228 (70%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
||| |||| || || ||||||||||| |||||||| ||||| | ||||| || ||
Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
|| ||||||||||| || |||| || ||||| | || ||||| | ||||| ||
Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130
Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574
| || ||||| || || ||||| ||| |||||||| || ||||| ||||| ||
Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070
Query 24575 AAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATTGATATC 24619
||| | |||| || || | || || || ||||||| | ||||
Sbjct 32069 AAATTTCCTTTCATCCGGCTTCAGCTTTTGATCCCAATCAGTAGTATC 32022
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680
|| || | ||||||||||||||| |||||||| || ||||| ||||| || ||||| | |
Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865
Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATT 24740
||||| |||||||| ||||| || |||| ||| || || ||||||| | ||| |
Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCTTCGAGGATTTTCTCGAAGTAGA 31805
Query 24741 GGTTC 24745
|||||
Sbjct 31804 GGTTC 31800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593651822868960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |