Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq159 116 3e-21
seq263 114 1e-20
seq47 107 2e-18
>seq159
Length=219009
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | ||| || | ||| | ||||| || || |||||||||||||| |
Sbjct 159246 CCACCTCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAA 159187
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | || |||| |||||||| ||| | ||||| | ||||||||| |||
Sbjct 159186 AGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 159127
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| |||||| || || | ||| || |||| ||| ||
Sbjct 159126 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCTACC 159067
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||| || || || |||||||| || || |||||
Sbjct 159066 TCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 159020
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| || | ||| || | ||| | ||||||||||||||| ||||| |||||
Sbjct 157786 CCACCTCTGAGACGGAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTG 157727
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| || || || || ||| | || | | ||||||||| |||
Sbjct 157726 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 157667
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| |||||| || || | | | || ||| ||||||
Sbjct 157666 ATGCCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACC 157607
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || ||||| || || || || |||||||| || |||||
Sbjct 157606 TCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 157560
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||| || ||||||||||||||||| | || ||| || |||| |||| ||| || ||
Sbjct 158211 GTGGATTCTTTTTGAATGTTATAGTCTGACAATGTTCGGCCGTCTTCCAACTGCTTTCCA 158152
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || || | |||||| || ||| | |||||||| || ||||| ||
Sbjct 158151 GCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTAGCCTTA 158092
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || ||| ||||||| ||||| || |||||||| || || | ||
Sbjct 158091 ACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCTGTAAGGGTC 158032
Query 21159 TTGACAAATATTTGCAT 21175
|||||||| || |||||
Sbjct 158031 TTGACAAAGATCTGCAT 158015
Score = 96.9 bits (106), Expect = 3e-15
Identities = 159/228 (70%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| || | ||| || | ||| | ||||||||||||||| ||||| |||||
Sbjct 159475 CCACCTCTGAGACGGAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTG 159416
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|||||| || | ||||| || || || || ||| | || | | ||||||||| |||
Sbjct 159415 AGGGTTCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 159356
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| |||||| || || | | | || ||| ||||||
Sbjct 159355 ATGCCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACC 159296
Query 21129 TCCACGGTAATGGTC-TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || ||| || || || || || |||||||| || |||||
Sbjct 159295 TCAAGGGTGATCGTCTTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 159248
>seq263
Length=158529
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| ||||| ||||||||||| | |||||| || ||||||||||||||||| |||||
Sbjct 64824 TCCACCTCGAAGCCTGAGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACT 64883
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
||||| | || || |||||||| || ||| | || | | ||| ||||| |||
Sbjct 64884 AAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGG 64943
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| || |||||||| |||||| || || | ||| |||||||| ||| ||
Sbjct 64944 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTATCACTGGGTTCAAC 65003
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || || || || || || ||||| ||||| || |||||
Sbjct 65004 CTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCACAAAGATCTGCAT 65051
>seq47
Length=390960
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| ||||||||||||||||| || || | ||||| || | ||||||| |||||| ||
Sbjct 276737 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTACCA 276796
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| ||||||| | ||||||||| || | |||||||| || |||||| |||
Sbjct 276797 GCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 276856
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | || |||| ||| ||| || | || ||||||||||| || | ||
Sbjct 276857 ACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTC 276916
Query 21159 TTGACAAATATTTGCAT 21175
|||||||| || |||||
Sbjct 276917 TTGACAAAAATCTGCAT 276933
Score = 105 bits (116), Expect = 6e-18
Identities = 161/228 (71%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | || || | ||| | || ||||||||||||||||| || || |
Sbjct 276251 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 276310
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCC-GCATAAATAAGTCTCTGCTGGTCCACGGG 21067
||||| || | ||||||| |||||| || ||| ||||||| | ||||||||| ||
Sbjct 276311 AGGGTACGGCCATCCTCCAACTGTTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGG 276370
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| |||||||| || |||||| ||||| | | | || |||| ||| |||
Sbjct 276371 GATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCAC 276430
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || ||||||||||| || | || |||||||| || |||||
Sbjct 276431 CTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276478
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | || || | ||| | || ||||||||||||||||| || || |
Sbjct 276480 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 276539
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | ||||||| ||| || || ||| ||||||| | ||||||||| ||
Sbjct 276540 AGGGTGCGACCATCCTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGG 276599
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || ||||| || |||||| || || | | | || |||| ||| |||
Sbjct 276600 ATTCCCTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 276659
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAA 21166
|| | || ||||||||||| || | || ||||||||
Sbjct 276660 TCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAA 276697
Score = 87.8 bits (96), Expect = 2e-12
Identities = 157/228 (69%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | || || | ||| | || ||||||||||||||||| || || |
Sbjct 277401 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 277460
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGG-TCCACGGG 21067
||||| || | ||||||| |||||| || ||| | ||||| | |||| || | | |
Sbjct 277461 AGGGTACGGCCATCCTCCAACTGTTTTCCAGCAAAGATAAGACGCTGCCGGCGTCTGGTG 277520
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| |||||||| || |||||| ||||| | | | ||| || ||||||
Sbjct 277521 GATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCCAC 277580
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || ||||||||||| || | || |||||||| || |||||
Sbjct 277581 CTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 277628
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037
||| |||||||||||||| || || || | | ||| || | ||||||| ||||||
Sbjct 276056 AGTTGACTCCTTTTGAATATTGTAATCGGAGAAGGTACGGCCATCCTCCA-CTGTTTTT- 276113
Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097
||| ||||||| | ||||||||| || | |||||||| || |||||| |||
Sbjct 276114 -GCAAAAATAAGACGCTGCTGGTCTGGTGGATC-CCTTCCTTATCCTGGATCTTGCCTTT 276171
Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157
||| | | | ||| || |||||| || | || ||||||||||| || | ||
Sbjct 276172 CACATTTTCAATAGTGTCTGAAGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGT 276231
Query 21158 TTTGACAAATATTTGCAT 21175
|||||||| || |||||
Sbjct 276232 CTTGACAAAAATCTGCAT 276249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422210814637832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |