Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq159 118 1e-21 seq463 105 7e-18 seq263 104 2e-17 seq1672 95.1 1e-14 >seq159 Length=219009 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || || || |||||||||||||| | || || || | | Sbjct 158791 AATGCAAATTTTTGTCAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGCCTTC 158850 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | ||| | |||| || |||| || || || ||||| ||| | || || Sbjct 158851 CGACACCATCGAAAATGTTAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCA 158910 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| || || || ||| |||| || | |||||||||| ||||||||| Sbjct 158911 ACAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAA 158970 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| | || || ||||| || Sbjct 158971 TATCCAAAAGGAATCTACACTCCATCTCGT 159000 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || ||||| | || || ||| || | Sbjct 159477 ATGCAGATCTTCGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCT 159536 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| || |||| ||||| || || |||||| | ||||| Sbjct 159537 GACACTATCGAAAACGTT-AAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCAGACCA 159595 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| || || || || || || || | || ||||||| ||||||||| Sbjct 159596 ACAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAA 159655 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 159656 TATCCAGAAGGAGTCCACCCTTCATCTCGT 159685 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || || |||||| | || || || | | Sbjct 157560 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACGATCACCCTTGAGGTGGAGCCTTCT 157619 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | ||||| || ||||| ||| | |||||| Sbjct 157620 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 157679 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || || || || || | || ||||||| |||||||||| Sbjct 157680 CAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAAC 157739 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| |||| || ||||| || Sbjct 157740 ATCCAAAAGGAGTCCACTCTTCATCTCGT 157768 Score = 100 bits (110), Expect = 3e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAAGCCAC 40748 ||||| || || || || || | || || ||| || |||||| | || || || | | Sbjct 159248 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAGACGATCACCCTTGAGGTGGAGCCTTC 159307 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||||| || || | ||||| || ||||| ||| | ||||| Sbjct 159308 TGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 159367 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || || || || || | || ||||||| ||||||||| Sbjct 159368 GCAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTACAA 159427 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| |||| || ||||| || Sbjct 159428 CATCCAAAAGGAGTCCACTCTTCATCTCGT 159457 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || || || || ||||| | || || ||| || | Sbjct 157788 ATGCAGATCTTTGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCT 157847 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| || |||| || || || || || ||| | ||| | Sbjct 157848 GACACTATCGAAAACGTT-AAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGACAA 157906 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| || || || || || || || | || ||||||| ||||||||| Sbjct 157907 -CAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAA 157965 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || ||||| || Sbjct 157966 CATCCAGAAGGAGTCCACCCTTCATCTCGT 157995 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| |||||||| ||||| || || || ||| | || ||||| || ||||||| | Sbjct 158412 TCAAGGCAAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTCATCTTTG 158471 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || ||||| |||| |||| || || || |||||||| |||||||||||| ||| Sbjct 158472 CTGGTAAACAATTGGAAGACGGCCGAACACTGTCGGACTACAATATCCAGAAGGAGTCCA 158531 Query 40886 CGCTGCATCTAGT 40898 | || ||||| || Sbjct 158532 CCCTTCATCTCGT 158544 >seq463 Length=112955 Score = 105 bits (116), Expect = 7e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| |||||||| ||||||||||| | || || ||| || Sbjct 58299 AAAATGCAGATTTTCGTTAAAACCCTCACGGGTAAAACCATCACGCTTGAGGTGGAACCC 58358 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | |||||| || || | ||||| ||||| |||||| |||| Sbjct 58359 AGTGACACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGAT 58418 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| || || ||||| || || || | | || ||| ||| ||| Sbjct 58419 CAGCAGCGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGAAGGACACTCTCCGATTAC 58478 Query 40867 AACATCCAGAAGG 40879 ||||| || |||| Sbjct 58479 AACATTCAAAAGG 58491 >seq263 Length=158529 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || ||||| |||||| | || || ||| ||| Sbjct 65051 ATGCAGATCTTTGTGAAAACATTGACTGGGAAAACTATCACCCTTGAGGTTGAACCCAGT 64992 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||||| || || | ||||| ||||| |||||| | ||||| Sbjct 64991 GATACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAA 64932 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || |||||||| || || | | ||||| | ||||||||| Sbjct 64931 CAGCGTTTGATCTTTGCCGGTAAACAGCTCGAAGATGGTAGGACCCTTAGTGACTACAAC 64872 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || |||||| | ||| ||||||| ||| Sbjct 64871 ATTCAAAAGGAGTCAACGTTGCATCTTGTG 64842 >seq1672 Length=38749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||| | || || ||||| ||||| || ||||||| || ||||| ||| |||| Sbjct 32377 TTCAATGCCGTTGAAACCATGCCATGCGTTAAGAAGAAGGCTGACTGGGCTCTGTCCTGG 32436 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGC-GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || || | | ||| | ||| || || | || | || || || || || || || Sbjct 32437 ATTGCTGATA-AGAACTCTACTTTTGCTGAAAGGGTGATTGCTTTTGCAGCAGTTGAAGG 32495 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | || || || || || || || |||| || ||||||||||| || || || ||||| Sbjct 32496 GATATTTTTCTCTGGAAGCTTTGCATCCATCTTCTGGCTCAAGAAGCGTGGACTTATGCC 32555 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||||||| || || |||||||| ||||| | || |||| Sbjct 32556 AGGCCTGACCTTTAGTAACGAGCTTATCTCTCGTGATGAGG 32596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || || || || || || || ||||||| |||||||||| || || | || Sbjct 31800 GAACCTCTACTTCGAGAAAATCCTCGAAGGTTCGTTGTTTTCCCCATTCAGTATCATGAT 31859 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || || ||||| || || || ||||| || Sbjct 31860 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTTTGGACTGTGGAAGAAGTGGATCTT 31919 Query 116696 TCCAAGG 116702 || |||| Sbjct 31920 TCAAAGG 31926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515158648863520