Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq47 107 3e-18
seq159 104 4e-17
seq30 87.8 3e-12
>seq47
Length=390960
Score = 107 bits (118), Expect = 3e-18
Identities = 163/231 (71%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || ||||| || || ||| | ||| | ||| | | |
Sbjct 276478 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGT 276419
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || || || || ||||| ||||| || ||||| || ||
Sbjct 276418 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAG 276359
Query 124659 CAAAGGCTTATTTTTGCAGG-AAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | ||||||||||| || |||||| || |||||| | || || | ||||| ||
Sbjct 276358 CAGCGTCTTATTTTTGCTGGTAAAACAGTTGGAGGATGGCCGTACCCTTTCTGATTACAA 276299
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| || || || | ||| | || | ||| | |||||||||||
Sbjct 276298 CATTCAAAAGGAGTCTACCCTTCATCTTGTCCTTCGTCTCCGAGGTGGTAT 276248
Score = 105 bits (116), Expect = 1e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607
||| | ||||| || || ||||| || || ||| | ||| | ||| | | ||| || |||
Sbjct 276697 TTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGTGACACCATT 276638
Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667
||| | || || || |||||||| || || || ||||| || || || | |||
Sbjct 276637 GAAAATGTCAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGACCAGCAGCGTCTT 276578
Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727
|||||||| ||||| || || |||||| |||| || | ||||| || ||||||||
Sbjct 276577 ATTTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTTTCTGATTACAACATTCAAAAG 276518
Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || | ||| | || | ||| | |||||||||||
Sbjct 276517 GAGTCTACCCTTCATCTTGTCCTTCGTCTCCGAGGTGGTAT 276477
Score = 102 bits (112), Expect = 1e-16
Identities = 162/231 (70%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || ||||| || || ||| | ||| | ||| | | |
Sbjct 276933 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGT 276874
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || || || || ||||| ||||| || ||||| || ||
Sbjct 276873 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAG 276814
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | ||||||||||| || ||||| || |||||| | || || | ||||| ||
Sbjct 276813 CAGCGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGCCGTACCCTTTCTGATTACAAC 276754
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT-TTACGAGGTGGTAT 124768
|||||||| || || || | ||| | || | ||| | |||||||||||
Sbjct 276753 ATTCAAAAGGAGTCTACCCTTCATCTTGTCCTTCGTCTCCCGAGGTGGTAT 276703
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || ||||| || || ||| | ||| | || |
Sbjct 276249 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAGCCTTCA 276190
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| || || || ||||| ||||| || ||||| || ||
Sbjct 276189 GACACTATTGAAAATGTGAAAGGCAAGATCCAGGATAAGGAAGGGAT-CCACCAGACCAG 276131
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | |||||||||||| |||||| | |||||| | || || || ||||| |||
Sbjct 276130 CAGCGTCTTATTTTTGCA--AAAACAGTG-GAGGATGGCCGTACCTTCTCCGATTACAAT 276074
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
|||||||| || |||||| | || | ||||| ||| | || |||||
Sbjct 276073 ATTCAAAAGGAGTCAACTCTTCACCTTGTTTTGCGTCTTCGTGGTGG 276027
>seq159
Length=219009
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || ||||| || || || || | || | || | |
Sbjct 158015 ATGCAGATCTTTGTCAAGACCCTTACAGGAAAGACCATCACATTGGAAGTGGAGCCCTCT 158074
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | || || ||||||||||| |||||||| || || |||||
Sbjct 158075 GACACCATCGAAAATGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAG 158134
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || ||||| ||||| || || || || | |||||||| ||| |||||
Sbjct 158135 CAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGAACATTGTCAGACTATAAC 158194
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||||||||| || | ||| | || | ||| | || ||||||||
Sbjct 158195 ATTCAAAAAGAATCCACCCTTCATCTCGTCCTTCGTCTTCGTGGTGGTAT 158244
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || ||| | ||| | || |
Sbjct 158791 AATGCAAATTTTTGTCAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGCCTTC 158850
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || ||| | || || ||||||||||| ||||| || || || |||||
Sbjct 158851 CGACACCATCGAAAATGTTAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCA 158910
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | || || ||||| ||||| || || || ||| |||| || | || || ||
Sbjct 158911 ACAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAA 158970
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||| ||||| ||||| || | ||| | || | ||| | |||||||| ||
Sbjct 158971 TATCCAAAAGGAATCTACACTCCATCTCGTCCTCCGTCTCCGAGGTGGCAT 159021
Score = 96.9 bits (106), Expect = 5e-15
Identities = 164/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| | || || || || || ||| ||||| | ||| | | |
Sbjct 158564 ATGCAGATCTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTAGAGGTGGAACCCAGT 158623
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | || || || |||||||| |||||||| || || |||||
Sbjct 158624 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 158683
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || ||||| ||||| ||| | |||||| |||| || | || || |||
Sbjct 158684 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTCAGCGACTACAAT 158743
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|| ||||||||||| || | ||| | || | ||| | || ||||| || ||| ||
Sbjct 158744 ATCCAAAAAGAATCCACCCTTCATCTCGTCCTCCGTCTCCGCGGTGGAATGCAAATTT 158801
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | |||||||| || ||||| || || || | ||| | || | |
Sbjct 157332 ATGCAGATTTTCGTGAAGACACTCACTGGCAAGACGATCACCCTTGAGGTGGAGCCTTCT 157391
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | || || ||||||||||| ||||| || || || ||||||
Sbjct 157392 GACACTATCGAAAATGTGAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAA 157451
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | || || ||||| ||||| || || || ||| |||| || | || || |||
Sbjct 157452 CAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAAT 157511
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| || | ||| | || | ||| | |||||||| ||
Sbjct 157512 ATCCAAAAGGAATCTACACTCCATCTCGTCCTCCGTCTCCGAGGTGGCAT 157561
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| | || || || || || ||| | ||| | ||| | |
Sbjct 159705 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTAGAACCCAGC 159764
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | || || || |||||||| |||||||| || || || |||
Sbjct 159765 GACACGATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 159824
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | ||||||||||| || ||||| || |||||| | || || | ||||| |||
Sbjct 159825 CAGCGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGACGTACTCTCTCTGATTACAAT 159884
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
||||| || ||||| ||| ||||| | || | ||| | || || ||
Sbjct 159885 ATTCAGAAGGAATCGACTCTGCATCTTGTCCTTCGTCTTCGTGGAGG 159931
>seq30
Length=458414
Score = 87.8 bits (96), Expect = 3e-12
Identities = 258/398 (65%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620
|||| ||| || | | ||| ||||| ||||||| |||| | | |||| ||||
Sbjct 345155 ACATAAAACTGGGCTAGACAGTGACACGGTGGTAATGCCATTTGGAGTAGATCTGAAGGA 345214
Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680
||||| || || | || || || || | || | |||||| || | | || |
Sbjct 345215 TTCCACGCAGTCATGATAATCCGTCGGGAATACGGATCATTTTTGATCATGTCAATTACT 345274
Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740
|| ||| ||||||| |||||| ||| || | |||| |||| | ||
Sbjct 345275 TGCTGTAACTGATCAACTCCTTGTCCCTCATAGTTATCTTTCATAGTCTTATACTCTGCT 345334
Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTA 205800
||||| |||||||||||||| ||||| || || || | |||||||| | | |||| |
Sbjct 345335 CCAAAGTGACGCCATTGAAAGCCATACACAGGTCCCAGGTCACCTTCCTCCCGATCAGTG 345394
Query 205801 AAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattccttta 205860
|| || ||| | | ||| || ||| |||||||||| || | |||||||
Sbjct 345395 AATCCCATTTTGTCCAGGAATTCCCTGGAAGAGTTTCCATCCCAAATGTGAACTCCTTTA 345454
Query 205861 ttttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATT 205920
||| || ||||| ||| || |||| | |||||| | | || || ||||||
Sbjct 345455 GCTTTCAGCTCATTTGCATTTGTACATCCCTTCACAAACCACAGAAGCTCCTCCACAATT 345514
Query 205921 CCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958
||| ||||||| | ||| || || | ||||||||
Sbjct 345515 CCTTTCCAAAAAACACGTTTGGTGGTCAGCAATGGAAA 345552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755367215033600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |