Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq47 107 3e-18 seq159 104 4e-17 seq30 87.8 3e-12 >seq47 Length=390960 Score = 107 bits (118), Expect = 3e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || ||| | ||| | ||| | | | Sbjct 276478 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGT 276419 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || || ||||| ||||| || ||||| || || Sbjct 276418 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAG 276359 Query 124659 CAAAGGCTTATTTTTGCAGG-AAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | ||||||||||| || |||||| || |||||| | || || | ||||| || Sbjct 276358 CAGCGTCTTATTTTTGCTGGTAAAACAGTTGGAGGATGGCCGTACCCTTTCTGATTACAA 276299 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || || | ||| | || | ||| | ||||||||||| Sbjct 276298 CATTCAAAAGGAGTCTACCCTTCATCTTGTCCTTCGTCTCCGAGGTGGTAT 276248 Score = 105 bits (116), Expect = 1e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | ||||| || || ||||| || || ||| | ||| | ||| | | ||| || ||| Sbjct 276697 TTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGTGACACCATT 276638 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 ||| | || || || |||||||| || || || ||||| || || || | ||| Sbjct 276637 GAAAATGTCAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGACCAGCAGCGTCTT 276578 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 |||||||| ||||| || || |||||| |||| || | ||||| || |||||||| Sbjct 276577 ATTTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTTTCTGATTACAACATTCAAAAG 276518 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || | ||| | || | ||| | ||||||||||| Sbjct 276517 GAGTCTACCCTTCATCTTGTCCTTCGTCTCCGAGGTGGTAT 276477 Score = 102 bits (112), Expect = 1e-16 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || ||| | ||| | ||| | | | Sbjct 276933 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGT 276874 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || || ||||| ||||| || ||||| || || Sbjct 276873 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAG 276814 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || ||||| || |||||| | || || | ||||| || Sbjct 276813 CAGCGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGCCGTACCCTTTCTGATTACAAC 276754 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT-TTACGAGGTGGTAT 124768 |||||||| || || || | ||| | || | ||| | ||||||||||| Sbjct 276753 ATTCAAAAGGAGTCTACCCTTCATCTTGTCCTTCGTCTCCCGAGGTGGTAT 276703 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || ||| | ||| | || | Sbjct 276249 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAGCCTTCA 276190 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || || ||||| ||||| || ||||| || || Sbjct 276189 GACACTATTGAAAATGTGAAAGGCAAGATCCAGGATAAGGAAGGGAT-CCACCAGACCAG 276131 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | |||||||||||| |||||| | |||||| | || || || ||||| ||| Sbjct 276130 CAGCGTCTTATTTTTGCA--AAAACAGTG-GAGGATGGCCGTACCTTCTCCGATTACAAT 276074 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| || |||||| | || | ||||| ||| | || ||||| Sbjct 276073 ATTCAAAAGGAGTCAACTCTTCACCTTGTTTTGCGTCTTCGTGGTGG 276027 >seq159 Length=219009 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || ||||| || || || || | || | || | | Sbjct 158015 ATGCAGATCTTTGTCAAGACCCTTACAGGAAAGACCATCACATTGGAAGTGGAGCCCTCT 158074 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || ||||||||||| |||||||| || || ||||| Sbjct 158075 GACACCATCGAAAATGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAG 158134 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| || || || || | |||||||| ||| ||||| Sbjct 158135 CAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGAACATTGTCAGACTATAAC 158194 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||| | || | ||| | || |||||||| Sbjct 158195 ATTCAAAAAGAATCCACCCTTCATCTCGTCCTTCGTCTTCGTGGTGGTAT 158244 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || ||| | ||| | || | Sbjct 158791 AATGCAAATTTTTGTCAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGCCTTC 158850 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || || ||||||||||| ||||| || || || ||||| Sbjct 158851 CGACACCATCGAAAATGTTAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCA 158910 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| ||||| || || || ||| |||| || | || || || Sbjct 158911 ACAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAA 158970 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||| || | ||| | || | ||| | |||||||| || Sbjct 158971 TATCCAAAAGGAATCTACACTCCATCTCGTCCTCCGTCTCCGAGGTGGCAT 159021 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || || || ||| ||||| | ||| | | | Sbjct 158564 ATGCAGATCTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTAGAGGTGGAACCCAGT 158623 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || |||||||| |||||||| || || ||||| Sbjct 158624 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 158683 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| ||| | |||||| |||| || | || || ||| Sbjct 158684 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTCAGCGACTACAAT 158743 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || | ||| | || | ||| | || ||||| || ||| || Sbjct 158744 ATCCAAAAAGAATCCACCCTTCATCTCGTCCTCCGTCTCCGCGGTGGAATGCAAATTT 158801 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||||| || ||||| || || || | ||| | || | | Sbjct 157332 ATGCAGATTTTCGTGAAGACACTCACTGGCAAGACGATCACCCTTGAGGTGGAGCCTTCT 157391 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || ||||||||||| ||||| || || || |||||| Sbjct 157392 GACACTATCGAAAATGTGAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAA 157451 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| ||||| || || || ||| |||| || | || || ||| Sbjct 157452 CAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAAT 157511 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | ||| | || | ||| | |||||||| || Sbjct 157512 ATCCAAAAGGAATCTACACTCCATCTCGTCCTCCGTCTCCGAGGTGGCAT 157561 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || || || ||| | ||| | ||| | | Sbjct 159705 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTAGAACCCAGC 159764 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || |||||||| |||||||| || || || ||| Sbjct 159765 GACACGATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 159824 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || ||||| || |||||| | || || | ||||| ||| Sbjct 159825 CAGCGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGACGTACTCTCTCTGATTACAAT 159884 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || ||||| ||| ||||| | || | ||| | || || || Sbjct 159885 ATTCAGAAGGAATCGACTCTGCATCTTGTCCTTCGTCTTCGTGGAGG 159931 >seq30 Length=458414 Score = 87.8 bits (96), Expect = 3e-12 Identities = 258/398 (65%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| ||| || | | ||| ||||| ||||||| |||| | | |||| |||| Sbjct 345155 ACATAAAACTGGGCTAGACAGTGACACGGTGGTAATGCCATTTGGAGTAGATCTGAAGGA 345214 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || || | || || || || | || | |||||| || | | || | Sbjct 345215 TTCCACGCAGTCATGATAATCCGTCGGGAATACGGATCATTTTTGATCATGTCAATTACT 345274 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 || ||| ||||||| |||||| ||| || | |||| |||| | || Sbjct 345275 TGCTGTAACTGATCAACTCCTTGTCCCTCATAGTTATCTTTCATAGTCTTATACTCTGCT 345334 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTA 205800 ||||| |||||||||||||| ||||| || || || | |||||||| | | |||| | Sbjct 345335 CCAAAGTGACGCCATTGAAAGCCATACACAGGTCCCAGGTCACCTTCCTCCCGATCAGTG 345394 Query 205801 AAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattccttta 205860 || || ||| | | ||| || ||| |||||||||| || | ||||||| Sbjct 345395 AATCCCATTTTGTCCAGGAATTCCCTGGAAGAGTTTCCATCCCAAATGTGAACTCCTTTA 345454 Query 205861 ttttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATT 205920 ||| || ||||| ||| || |||| | |||||| | | || || |||||| Sbjct 345455 GCTTTCAGCTCATTTGCATTTGTACATCCCTTCACAAACCACAGAAGCTCCTCCACAATT 345514 Query 205921 CCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 ||| ||||||| | ||| || || | |||||||| Sbjct 345515 CCTTTCCAAAAAACACGTTTGGTGGTCAGCAATGGAAA 345552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755367215033600