Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq248 104 3e-17 seq47 104 3e-17 seq571 102 9e-17 seq2157 100 3e-16 seq463 100 3e-16 seq2337 96.9 4e-15 seq159 96.9 4e-15 seq1282 93.3 5e-14 seq2350 87.8 2e-12 seq24 87.8 2e-12 >seq248 Length=162157 Score = 104 bits (114), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 136214 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 136155 Query 60125 ATACTACCGAGGATTGAATATATAAC-TTGAA 60155 |||||| |||||| | ||||||| ||||| Sbjct 136154 ATACTATCGAGGAAGTTAGATATAACGTTGAA 136123 >seq47 Length=390960 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| |||||||||| || || || | || || | ||| |||||||| || Sbjct 276742 CTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTACCAGCAAA 276801 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | ||||| ||| ||| || || | | Sbjct 276802 AATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATT 276861 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | |||||| |||| |||||||| ||||| || || ||||| || Sbjct 276862 TTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 276921 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 276922 AAAAATCTGCAT 276933 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| |||||||||| || || || | || || | |||||| ||||| || Sbjct 276515 CTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGACCATCCTCCAACTGCTTTCCAGCAAA 276574 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||| || ||| || |||| | Sbjct 276575 AATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTTGACATT 276634 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | |||||| |||| |||||||| ||||| || || ||||| || Sbjct 276635 TTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 276694 Query 43172 AAA 43174 ||| Sbjct 276695 AAA 276697 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG-CTTACCAGCGA 43050 |||||||||||| |||||||||| || || || | || || | ||| |||||||| | Sbjct 276286 CTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTTACCAGCAA 276345 Query 43051 ATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 43110 | || || ||||||||||| | || | | ||||| ||| ||| || || | Sbjct 276346 AAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACAT 276405 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || | |||||| |||| |||||||| ||||| || || ||||| | Sbjct 276406 TTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGA 276465 Query 43171 CAAAGATTTGCAT 43183 |||| || ||||| Sbjct 276466 CAAAAATCTGCAT 276478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCA-GAGTCCGCTCGTCATCTAGCTGCTTACCA--GC 43048 |||||||||||| |||||||||| | | || || | || | | |||||| ||| | Sbjct 276972 CTCCTTTTGAATGTTGTAATCAGAAAGGGGTGCGACCATCTCCCAACTGCTTTCCAAGCC 277031 Query 43049 GAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGA 43107 || || || ||||||||||| | || | | |||||| || || | || | |||| Sbjct 277032 AAAAATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTGGAATCTTAGCCTTGA 277091 Query 43108 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| || | |||||| |||| |||||||| ||||| || || |||| Sbjct 277092 CATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCT 277151 Query 43168 TTACAAAGATTTGCAT 43183 | ||||| |||||||| Sbjct 277152 TGACAAAAATTTGCAT 277167 >seq571 Length=97103 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 77377 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 77318 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 77317 ATACTATCGAGGAGTG 77302 >seq2157 Length=30512 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 22345 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 22404 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 22405 ATACTATCGAGGA 22417 Score = 96.9 bits (106), Expect = 4e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 24643 TCTCC-CGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 24585 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 24584 ATACTATCGAGGA 24572 >seq463 Length=112955 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||||||||| |||||||| | || |||| | || || || || || || || || | Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||| || | || | | |||||||||| ||| || |||| || Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 58372 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || | |||||| || | |||||||||||| ||||| || || || || | Sbjct 58371 CGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGA 58312 Query 43174 AGATTTGCATTTT 43186 | || |||||||| Sbjct 58311 AAATCTGCATTTT 58299 >seq2337 Length=28304 Score = 96.9 bits (106), Expect = 4e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 20551 TCTCC-CGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 20609 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 20610 ATACTATCGAGGA 20622 >seq159 Length=219009 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||||| ||||| || | || || | ||| |||||||| || Sbjct 159895 TCCTTCTGAATATTGTAATCAGAGAGAGTACGTCCATCCTCCAACTGTTTACCAGCAAAA 159836 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||| ||||| | || | | ||||| || ||| || |||| || Sbjct 159835 ATAAGACGCTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTC 159776 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||||||| | ||| || || | |||||||| || || || | ||||| || Sbjct 159775 TCGATCGTGTCGCTGGGTTCTACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACG 159716 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 159715 AAGATCTGCAT 159705 >seq1282 Length=50195 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| |||||||||||||||| |||| |||||||||||| Sbjct 24972 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACA-GCGGGGATACTCACCACT 24914 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 24913 ATACTATCGAGGA 24901 >seq2350 Length=28118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/75 (88%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCT-GGTCTCCC-GCGTGACAGGCGGACATACTCACCA 60122 ||||| || | ||||||||||||| |||||||| ||||||||||||| |||||||||| Sbjct 17341 TCTCCCCGACGGGGAATCGAACCCCCGGTCTCCCCGCGTGACAGGCGGGGATACTCACCA 17282 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 17281 CTATACTATCGAGGA 17267 >seq24 Length=477709 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 462275 AAAAATGGCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 462216 Query 60118 CACCACTATAC 60128 ||||||||||| Sbjct 462215 CACCACTATAC 462205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571750397136560