Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq159 95.1 8e-15 seq47 82.4 5e-11 >seq159 Length=219009 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||| ||||| || || ||| | || ||||| || ||||| || || Sbjct 159211 TTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAA 159152 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| ||| | || |||||||| ||||| ||| | || Sbjct 159151 GATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 159092 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| || | | ||| || || | |||||||| || || || | |||||| || Sbjct 159091 CTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGAC 159032 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 159031 GAAGATCTGCAT 159020 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || ||||| ||||| |||| ||| |||| ||||||||||| || || || Sbjct 158206 TTCTTTTTGAATGTTATAGTCTGACAATGTTCGGCCGTCTTCCAACTGCTTTCCAGCAAA 158147 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| |||||||| || ||| | | ||||| || ||||| ||| | || Sbjct 158146 GATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTAGCCTTAACATT 158087 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || |||| |||||||| || || || || || || || Sbjct 158086 TTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCTGTAAGGGTCTTGAC 158027 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 158026 AAAGATCTGCAT 158015 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || || || | ||| ||| ||||| || ||||| || || Sbjct 159932 TCCTCCACGAAGACGAAGGACAAGATGCAGAGTCGATTCCTTCTGAATATTGTAATCAGA 159873 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||||||| || || || ||||| || ||||| ||||| ||| Sbjct 159872 GAGAGTACGTCCATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGTTGGTCTGGGGG 159813 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| ||| | || | |||| ||| | | ||| || Sbjct 159812 AATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCGCTGGGTTCTAC 159753 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || | ||| || || ||||||||||| Sbjct 159752 CTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 159705 >seq47 Length=390960 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||| || || || |||| | || |||||||| || || || ||| Sbjct 276743 TCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTACCAGCAAAA 276802 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| | ||| | || ||||| || ||||| ||| | || Sbjct 276803 ATAAGACGCTGCTGGTCTGGTGGGATCCCT-TCCTTATCCTGGATCTTGGCCTTCACATT 276861 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| ||||| || ||||| || || Sbjct 276862 TTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 276921 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 276922 AAAAATCTGCAT 276933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323034980189120