Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1672 93.3 4e-14 >seq1672 Length=38749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCG 16588 |||||||| ||||| | ||| ||||| || |||||||| || |||||||||| |||||| Sbjct 32218 TACATTTCGGAATGCACATTTTCCATCGCAATCTGAAATCCGTAAAAGCATCGGGCTTCG 32159 Query 16589 GATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTA 16648 | | ||| ||||| | || | || | |||||||||||||| |||||||| Sbjct 32158 GTGACTTGCACTTCCTGGCTGAATCGCTCCACCAAGTTTTCGTTAACAATTCCATCAGAT 32099 Query 16649 GCTGCAAAAAACGC 16662 |||||||| || || Sbjct 32098 GCTGCAAAGAAGGC 32085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/145 (75%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 15882 AACTTTAAAAATCAATATCTAGAGAAAACAC-ATT--ATCTTTTTTATTTGACATAACTG 15938 || ||||||||||| ||| || | ||| || ||| ||| ||||| || ||| ||| Sbjct 33153 AATTTTAAAAATCAGCATCCAGGGTAAATACCATTTCATCCTTTTTGTT---CATGACTC 33097 Query 15939 ACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAA 15998 ||||| || || | ||| ||||||||||||| |||||||| ||||| | ||| | Sbjct 33096 CTGCCTTTTGGTACTCGCCAACCTTCTTTTCAAAGAAGTTTGTTTTGCCTTCCAGTGAGA 33037 Query 15999 TATTTTCCATAAAATCAAAAGGATT 16023 ||| |||||||||||||| ||||| Sbjct 33036 TATGCTCCATAAAATCAAAGGGATT 33012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462457643277200