Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq159 105 5e-18 seq263 87.8 1e-12 >seq159 Length=219009 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||| ||||| ||||| || ||||||||| | || || ||||||||| || Sbjct 157534 TGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGC 157475 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || | ||||||||| ||| | |||||||||||| ||| | | Sbjct 157474 TTTCCAGCAAAGATGAGACGTTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTT 157415 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | | ||||||| ||||| |||| |||||| | ||||| || Sbjct 157414 GCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCAGTG 157355 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||| || || ||||| ||||| Sbjct 157354 AGTGTCTTCACGAAAATCTGCAT 157332 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||| ||||| ||||| || ||||||||| | || || ||||||||| || Sbjct 158994 TGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGC 158935 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || | |||||||| ||| | |||||||||||| ||| | Sbjct 158934 TTTCCAGCAAAGATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTG 158875 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | | ||||| ||||| |||| |||||| ||||||| || Sbjct 158874 GCCTTAACATTTTCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTA 158815 Query 18303 AATGTTTTTACAAAAATTTGCATT 18326 | || || ||||||||||||||| Sbjct 158814 AGGGTCTTGACAAAAATTTGCATT 158791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || |||||||| |||||||| ||||| | | || | ||||||||||||| Sbjct 159222 TGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCTTCCAATTGT 159163 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| ||||||| | || || || ||| | ||||||||| || || | Sbjct 159162 TTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTG 159103 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | | ||||||| ||| || || | ||||||| | || || ||| Sbjct 159102 GCCTTGACATTCTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGGTCTTTCCAGTC 159043 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || || ||||| Sbjct 159042 AAAGTTTTGACGAAGATCTGCAT 159020 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||| || ||||||||||||||||| ||||| | | Sbjct 158241 CCACCACGAAGACGAAGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGAC 158182 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | |||||||| || || || ||| |||| || | || ||||| ||| Sbjct 158181 AATGTTCGGCCGTCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGG 158122 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | ||| || | | | | |||||| |||||| | Sbjct 158121 ATACCTTCCTTATCTTGAATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACT 158062 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || || | || || ||||| || ||||| Sbjct 158061 TCCAATGTGATGGTCTTTCCTGTAAGGGTCTTGACAAAGATCTGCAT 158015 >seq263 Length=158529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || || || || | || | ||||| || ||||||||||||||||| Sbjct 64824 TCCACCTCGAAGCCTGAGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACT 64883 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || ||| |||||| | ||||| || ||| |||| | | ||||| || ||| Sbjct 64884 AAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGG 64943 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||||| | | | | ||| |||| ||| || Sbjct 64944 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTATCACTGGGTTCAAC 65003 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| |||| || ||||||||||| ||||| || ||||| Sbjct 65004 CTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCACAAAGATCTGCAT 65051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379300532156490