Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1326 116 5e-21 seq1672 113 6e-20 >seq1326 Length=48828 Score = 116 bits (128), Expect = 5e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || ||||||||||| || ||||||| || |||||||| || || | ||| | Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||| || ||||||||||| ||||| |||||||| ||||| || |||| | |||| Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250 Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62544 ||||| |||||||| | || ||||| | ||||| Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTA 34213 Score = 111 bits (122), Expect = 2e-19 Identities = 198/287 (69%), Gaps = 9/287 (3%) Strand=Plus/Minus Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||| ||||| | || || ||||| || || ||||| | || || || ||| Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694 Query 62895 TTCAGTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAACAGAT 62951 |||| ||| |||||| || | ||| | | ||| |||| |||| |||| |||| Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634 Query 62952 GCCAGATTACACACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 |||| ||| |||||||||| |||| | | | | ||| | | ||| |||||||| Sbjct 33633 GCCAAATTGCACACGGCTATTTCATCCTTTGAA---GAATACTCGACTATTTCAGTGCAC 33577 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | ||| ||| ||||| ||||| | ||| || ||||| ||| |||||||||||| Sbjct 33576 AAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCC 33517 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 || || | | | |||| || |||||||| || || ||||| ||||| Sbjct 33516 TTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470 Score = 105 bits (116), Expect = 8e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 ||| ||||||||||| || | || || | ||| || ||||| || ||||| |||||||| Sbjct 32200 TTTCTTTGTTTCCTTATGCAAGTTAGAAACGGCAATCCTGGCAGCAAGAATCGCATAATC 32141 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 |||||| | |||||| |||| || || | || || |||| | |||| | ||| || || Sbjct 32140 CGGATGGTTTGTAGTTAAAGTAGCAGCAGTCTCAGCAGCCAAATTGTCAAGTTCCACAGT 32081 Query 64136 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64195 ||| |||||| || | || ||| ||||| | || ||| | ||| || | | Sbjct 32080 TGTAACTCCAGAGTACAAGCCACTAATCACCTTGAGAGTGATTGCAGGAGGGTCCACAAA 32021 Query 64196 ATCCGTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAA 64249 |||| |||| | |||||||| || |||| |||||| || || || ||||| Sbjct 32020 ATCCATGTTAAGCCCATAGCA-AAGCTTCTCAATACGGCTGGTTATCTTGTCAAA 31967 >seq1672 Length=38749 Score = 113 bits (124), Expect = 6e-20 Identities = 162/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 ||| |||| || || || |||||||| |||||||| ||||| | ||||| || || Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 |||||||||||||| || |||| || ||||| | |||||||| | ||||| || Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | || ||||| || || ||||||||| |||||||| || ||||| ||||| || Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070 Query 34022 AAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATTGATATC 34066 ||| | |||| || || | || || || ||||||| | |||| Sbjct 32069 AAATTTCCTTTCATCCGGCTTCAGCTTTTGATCCCAATCAGTAGTATC 32022 Score = 100 bits (110), Expect = 4e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || || | ||||||||||||||| |||||||| || ||||| ||||| || ||||| | | Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATA 34187 ||||| |||||||| || || ||||||| ||| || || |||||| | ||| | | Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCTTCGAGGATTTTCTCGAAGTAGA 31805 Query 34188 GGTTC 34192 ||||| Sbjct 31804 GGTTC 31800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629743580686560