Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1326 116 5e-21
seq1672 113 6e-20
>seq1326
Length=48828
Score = 116 bits (128), Expect = 5e-21
Identities = 120/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || ||||||||||| || ||||||| || |||||||| || || | ||| |
Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||| || ||||||||||| ||||| |||||||| ||||| || |||| | ||||
Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250
Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62544
||||| |||||||| | || ||||| | |||||
Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTA 34213
Score = 111 bits (122), Expect = 2e-19
Identities = 198/287 (69%), Gaps = 9/287 (3%)
Strand=Plus/Minus
Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894
||||| ||||| | || || ||||| || || ||||| | || || || |||
Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694
Query 62895 TTCAGTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAACAGAT 62951
|||| ||| |||||| || | ||| | | ||| |||| |||| |||| ||||
Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634
Query 62952 GCCAGATTACACACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCAGTGCAA 63008
|||| ||| |||||||||| |||| | | | | ||| | | ||| ||||||||
Sbjct 33633 GCCAAATTGCACACGGCTATTTCATCCTTTGAA---GAATACTCGACTATTTCAGTGCAC 33577
Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068
| ||| ||| ||||| ||||| | ||| || ||||| ||| ||||||||||||
Sbjct 33576 AAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCC 33517
Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115
|| || | | | |||| || |||||||| || || ||||| |||||
Sbjct 33516 TTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470
Score = 105 bits (116), Expect = 8e-18
Identities = 166/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075
||| ||||||||||| || | || || | ||| || ||||| || ||||| ||||||||
Sbjct 32200 TTTCTTTGTTTCCTTATGCAAGTTAGAAACGGCAATCCTGGCAGCAAGAATCGCATAATC 32141
Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135
|||||| | |||||| |||| || || | || || |||| | |||| | ||| || ||
Sbjct 32140 CGGATGGTTTGTAGTTAAAGTAGCAGCAGTCTCAGCAGCCAAATTGTCAAGTTCCACAGT 32081
Query 64136 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64195
||| |||||| || | || ||| ||||| | || ||| | ||| || | |
Sbjct 32080 TGTAACTCCAGAGTACAAGCCACTAATCACCTTGAGAGTGATTGCAGGAGGGTCCACAAA 32021
Query 64196 ATCCGTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAA 64249
|||| |||| | |||||||| || |||| |||||| || || || |||||
Sbjct 32020 ATCCATGTTAAGCCCATAGCA-AAGCTTCTCAATACGGCTGGTTATCTTGTCAAA 31967
>seq1672
Length=38749
Score = 113 bits (124), Expect = 6e-20
Identities = 162/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
||| |||| || || || |||||||| |||||||| ||||| | ||||| || ||
Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961
|||||||||||||| || |||| || ||||| | |||||||| | ||||| ||
Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130
Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021
| || ||||| || || ||||||||| |||||||| || ||||| ||||| ||
Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070
Query 34022 AAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATTGATATC 34066
||| | |||| || || | || || || ||||||| | ||||
Sbjct 32069 AAATTTCCTTTCATCCGGCTTCAGCTTTTGATCCCAATCAGTAGTATC 32022
Score = 100 bits (110), Expect = 4e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127
|| || | ||||||||||||||| |||||||| || ||||| ||||| || ||||| | |
Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865
Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATA 34187
||||| |||||||| || || ||||||| ||| || || |||||| | ||| | |
Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCTTCGAGGATTTTCTCGAAGTAGA 31805
Query 34188 GGTTC 34192
|||||
Sbjct 31804 GGTTC 31800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629743580686560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |