Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1326 134 1e-26 seq1672 87.8 2e-12 >seq1326 Length=48828 Score = 134 bits (148), Expect = 1e-26 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||||||||| ||||| || ||||| ||||| ||| |||| ||||||| Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| || | || ||||| | |||||||||||||||||||| || | || | Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 ||||| | || ||| | | ||| ||| ||||| ||||||||| ||||| Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTAAACTGGACCAATCCCACAAATCG 34190 Query 37318 GTTGG-GTT-CTTTAACCACATATCATATTGTAGAAT 37352 ||||| ||| | || |||||||||||| || | ||| Sbjct 34189 GTTGGAGTTACGTT--CCACATATCATACTGCAAAAT 34155 Score = 96.9 bits (106), Expect = 3e-15 Identities = 244/365 (67%), Gaps = 7/365 (2%) Strand=Plus/Minus Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 ||||| | |||||||| || | ||| | |||||| || | ||| || || | ||||| Sbjct 32949 TATCTTGCCGTGTTATTGTAGACTCTCAGCATAGGAACCAAACCGTTGGAGATTCCGTTG 32890 Query 38248 ATACCGGATATATAAGTACCCT-TAGCTCGTAT--ATTACTTATCGACAATCCTATTCCA 38304 |||| || || | ||||| | || | || | | || || ||| || ||| Sbjct 32889 GTACCACCAATGTACG-ACCCTGTTGCCCTGATGCAGTGAACATTGAG--TCCGATGCCA 32833 Query 38305 CCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTG 38364 || || ||| || || || ||||| || || | |||||| | || ||||| || ||| Sbjct 32832 CCAGCGCTTTTAGAAATCAATGCGCACTGCTTAAGAGTATCATAAATTCCTTCAATGCTG 32773 Query 38365 TCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTA 38424 || |||| |||| || | || ||| || | |||||| || ||| | || || Sbjct 32772 TCTTCCTGCATTGTAAGAAGGAAGCAAGAGGAAAGTTGAGGTCTTGTAGTGGCAGCATTG 32713 Query 38425 AATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATT 38484 || | || | |||||| || |||||||| || |||| |||| || ||||| || Sbjct 32712 AAAAGAGTCG-AGATGCGTGAGTGAACCATCGCTCAGACATTAAATTGTAAGTTTCAATA 32654 Query 38485 ACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGT 38544 | |||| || ||| | | ||||| || | | || ||||||||||| ||||||||| Sbjct 32653 GCCGCATCAATGTCATCATCATGAATCCCAATTGCAACTCTCATTAGCATGTGTTGTGGT 32594 Query 38545 CTTTC 38549 | ||| Sbjct 32593 CGTTC 32589 >seq1672 Length=38749 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 12116 TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTC 12175 ||||| | ||| |||||||| || |||||||| ||| | | | || ||||||| | Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865 Query 12176 CAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||||||||||||||| ||| ||||||| ||||||||| Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCT 31827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468469736622880