Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1326 122 1e-22 seq1672 102 1e-16 >seq1326 Length=48828 Score = 122 bits (134), Expect = 1e-22 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || |||||||||||||| || ||||||| || |||||||| || || | ||| | Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||| || ||||||||||| ||||| |||||||| ||||| || |||| | |||| Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250 Query 65301 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 65337 ||||| |||||||| | || ||||| | ||||| Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTA 34213 Score = 116 bits (128), Expect = 5e-21 Identities = 199/287 (69%), Gaps = 9/287 (3%) Strand=Plus/Minus Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 ||||| ||||| | || || ||||| || || ||||| | || || || ||| Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694 Query 65688 TTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGAT 65744 |||| ||| |||||| || || ||| | | ||| |||| |||| |||| |||| Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634 Query 65745 GCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 |||| ||| || ||||||| |||| | | | | ||| | | ||| |||||||| Sbjct 33633 GCCAAATTGCACACGGCTATTTCATCCTTTGAA---GAATACTCGACTATTTCAGTGCAC 33577 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 | ||| ||| ||||||||||| | ||| || ||||| ||| |||||||||||| Sbjct 33576 AAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCC 33517 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 || || | | | |||| || |||||||| || || ||||| ||||| Sbjct 33516 TTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 ||| |||||||| || || | || || ||||| || || || || | ||| |||||||| Sbjct 32200 TTTCTTTGTTTCCTTATGCAAGTTAGAAACGGCAATCCTGGCAGCAAGAATCGCATAATC 32141 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 |||||| | |||||| |||| || || | || || |||| | |||| | ||| || || Sbjct 32140 CGGATGGTTTGTAGTTAAAGTAGCAGCAGTCTCAGCAGCCAAATTGTCAAGTTCCACAGT 32081 Query 66929 TGTTACTCCA 66938 ||| |||||| Sbjct 32080 TGTAACTCCA 32071 >seq1672 Length=38749 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||| |||| || || ||||||||||| |||||||| ||||| | ||||| || || Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 || ||||||||||| || |||| || ||||| | || ||||| | ||||| || Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 36591 | || ||||| || || ||||| ||| |||||||| || ||||| ||||| Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATG 32076 Score = 96.9 bits (106), Expect = 5e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 || || | ||||||||||||||| |||||||| || ||||| ||||| || ||||| | | Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 ||||| |||||||| ||||| || |||| ||| || || Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCT 31827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658095448241680