Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq159 113 4e-20 seq263 100 3e-16 seq47 87.8 2e-12 seq463 82.4 8e-11 >seq159 Length=219009 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || | || | ||||| || ||||| || || || ||||| Sbjct 157559 GCCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCT 157500 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| | ||| || |||||| |||| |||||||| ||||| || || Sbjct 157499 GAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGTTGATCTGGGGG 157440 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| | |||| || | | ||| | ||||| | ||||||| Sbjct 157439 AATGCCTTCCTTATCT-TGAATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCA 157381 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||||||| || | || || ||||| || ||||| Sbjct 157380 CCTCAAGGGTGATCGTCTTGCCAGTGAGTGTCTTCACGAAAATCTGCAT 157332 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||| ||||| || ||||| | || | || || || || Sbjct 157762 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCAAGTTGC 157703 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||||| ||| ||||| || || || |||||||| ||||| ||| || Sbjct 157702 TTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTA 157643 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | ||||| | ||||||||||||| ||| | |||||| || ||| Sbjct 157642 GCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTTCCAGTC 157583 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 || || || || || || ||||| Sbjct 157582 AAAGTCTTGACAAAGATCTGCAT 157560 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || | || | ||||| || ||||| || || || ||||| Sbjct 159019 GCCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCT 158960 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| | ||| || |||||| |||| ||||| || ||||| || || Sbjct 158959 GAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGTTGATCTGGGGG 158900 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| | || | ||| | | ||| | ||||||| ||||||| Sbjct 158899 AATGCCTTCCTTATCT-TGAATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGGCTCCA 158841 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | || ||||| || | || || || || |||||||| Sbjct 158840 CCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 158792 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || | |||| || || ||||| ||||||||||| || Sbjct 159247 GCCACCTCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGA 159188 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || | || | ||||| | ||||| |||||| |||| ||||| ||||| || || | Sbjct 159187 AAGGGTACGTCCA-TCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGG 159129 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | |||||||| ||||| ||| || || | | || | ||||| |||| || | Sbjct 159128 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCTA 159069 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 159068 CCTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 159020 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||| ||||| || ||||| | || | || || || || Sbjct 159451 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCCTCAAGTTGC 159392 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||||| ||| ||||| || || || |||||||| ||||| ||| || Sbjct 159391 TTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTA 159332 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC-TTGCCGGT 139740 || | | ||| | ||||| | ||||||||||||| ||| | |||| || || || Sbjct 159331 GCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTTTCCAGT 159272 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || || || || ||||| Sbjct 159271 CAAAGTCTTGACAAAGATCTGCAT 159248 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || ||||||||||||||||| || || ||| | |||||| | ||| Sbjct 158217 TGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTTCGGCCGTCTTCCAACTGC 158158 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| ||||| |||||||| || || || ||||| || || ||| | || Sbjct 158157 TTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATC-TTGAATCTT 158099 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | ||| | ||||| | ||||||||| || | || | ||||| || || Sbjct 158098 AGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCTGT 158039 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | || || || || || |||||| Sbjct 158038 AAGGGTCTTGACAAAGATCTGCATA 158014 >seq263 Length=158529 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| ||||||||||| || || || | || || ||||||||||||||||| Sbjct 64854 CGTTGACTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTGTTTACC 64913 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| ||| || || || || || || || || ||||| ||| || || Sbjct 64914 GGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTT 64973 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | || || |||| || ||||||| ||| | || || || ||||| || Sbjct 64974 GACATTTTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGTCAATGT 65033 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || || ||||| Sbjct 65034 TTTCACAAAGATCTGCAT 65051 >seq47 Length=390960 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | |||| |||||||| ||||||||||| ||||| Sbjct 277630 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 277689 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| | | |||||| | |||| |||| ||||| ||||| || || || Sbjct 277690 AGCGTACGGCCATCTCCAA-CTGTTTTC-AGCAAAGATAAGACGCTGCTGGTCTGGTGGG 277747 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || || | | ||| | ||||||| ||||||||| Sbjct 277748 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCGGAAGGCTCCACC 277807 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | || || ||||| |||||||| Sbjct 277808 TCGAGAGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAAATTTGCAT 277854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| ||||||||||| ||||| | || | || || | |||| Sbjct 276731 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGT 276790 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | || ||||| ||||| || || || || ||||| || || ||| || Sbjct 276791 TTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTG 276850 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | ||||| |||| |||||||| | || | |||||||| || Sbjct 276851 GCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTA 276910 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || || || || |||||| Sbjct 276911 AGAGTCTTGACAAAAATCTGCATA 276934 >seq463 Length=112955 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 ||||||||||| |||||| | ||| || || ||||| ||||| || ||| ||||| Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCC 139696 | || |||||||| || || || || || ||||| ||| || || | | || Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 58370 Query 139697 ACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAAT 139756 | ||||| |||| |||||||||| || | || || || || | ||||| ||||| Sbjct 58369 ATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAA 58310 Query 139757 ATTTGCAT 139764 || ||||| Sbjct 58309 ATCTGCAT 58302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496005700078400