Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1326 127 3e-24 seq1672 107 3e-18 >seq1326 Length=48828 Score = 127 bits (140), Expect = 3e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || |||||||||||||| || ||||||| || |||||||| || |||| ||| | Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||| || ||||||||||| ||||| ||||| || ||||| || |||| | |||| Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250 Query 79180 CTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||||| |||||||| | || ||||| | ||||| | ||||||||| | ||| Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTAAACTGGACCAATCCCACAAATCG 34190 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 | || || ||||| | |||||| || | ||| Sbjct 34189 GTTGGAGTTACGTTCCACATATCATACTGCAAAAT 34155 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 79848 TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGG 79907 ||| ||||| ||| ||||| || ||||| || ||| ||| ||||| |||| | ||| Sbjct 33321 TGTGTATAAGGTTTCAAACTCTTCACCCCAGACTTCGAATAAATCAGGAGATTCTTTAGG 33262 Query 79908 ACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATC 79965 |||||||| |||| || || | | |||| |||| ||||| || | ||| |||||| Sbjct 33261 ACACATCAGACACCAGTCACCGT--TGCTTTCGACTCTCTTCATGAATAAATCGGGAATC 33204 Query 79966 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 80025 || | || | ||| | ||| || | | || ||| || || || || || || || | Sbjct 33203 CACATGGCAAAAAACAAATCCCTTGCACGATTCTCTTCTTTCCCAGTGTTTTTCTTCAAG 33144 Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 || | || | | | ||| | ||||||||||||||| || || || Sbjct 33143 TCCAAAAATTCAAAGACATCTGCATGCCACGGTTCCAAATACATAGC 33097 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT---TAGCATCC 79656 ||| |||| |||| || | |||||||| ||| || ||||||| |||| | | | Sbjct 33657 ACATACATATTCACAGCAATAGATGCCAAATTGCACACGGCTATTTCATCCTTTGAA--- 33601 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | ||| | | |||||||||||| | || ||| || |||||||| | ||| || ||| Sbjct 33600 GAATACTCGACTATTTCAGTGCACAAATTTGAACATTTGATGGTTCCAAGATTCTGCTGA 33541 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || ||| |||||||||||||| || | | | | || || |||||||| || || Sbjct 33540 TTGGATTTTCGATTACACGCATCCTTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGG 33481 Query 79777 GATTCTATAAT 79787 ||||| ||||| Sbjct 33480 GATTCAATAAT 33470 >seq1672 Length=38749 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 ||| |||| || || || |||||||| |||||||| ||||| | ||||| || || Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 |||||||||||||| || |||| || ||||| | |||||||| | ||||| || Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 50393 | || ||||| || || ||||| ||| |||||||| || ||||| ||||| Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATG 32076 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || || | ||| ||||||||||| |||||||| || ||||| ||||| || ||||| | | Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 ||||| |||||||| || || ||||||| ||| || || Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCT 31827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718184385459280