Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1672 118 1e-21 seq1326 109 7e-19 >seq1672 Length=38749 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||| |||| || || || |||||||| |||||||| ||||| | ||||| || || Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 |||||||||||||| || |||| ||| ||||| || || ||||| | ||||| || Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | || |||||||| || ||||| ||| |||||||| || ||||| ||||| || Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070 Query 42505 AAAATATTTTTCGTCCGG 42522 ||| | |||| ||||| Sbjct 32069 AAATTTCCTTTCATCCGG 32052 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || || | ||| |||||||| || |||||||| || || || ||||| || ||||| | | Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 |||||||||||||| ||||| ||||||| ||| || || Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCT 31827 >seq1326 Length=48828 Score = 109 bits (120), Expect = 7e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || |||||||||||||| || ||||| | || |||||||| || || | ||| | Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||| || ||||||||||| ||||| |||||||| ||||| || |||| | || | Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250 Query 71263 CTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322 ||||| |||||| ||| | ||||| | ||||| | ||||| ||| | ||| Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTAAACTGGACCAATCCCACAAATCG 34190 Query 71323 GATGG 71327 | ||| Sbjct 34189 GTTGG 34185 Score = 98.7 bits (108), Expect = 1e-15 Identities = 195/286 (68%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 71590 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCC 71649 ||||| ||||| | || || ||||| || || ||||| | || || || ||| Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694 Query 71650 TTTAGTTTGAGAAAATCAAATCTCCCATC---TATTACAAACACGTTCAAGGCAACAGAT 71706 || | ||| |||||| || | | ||| | | ||| ||| |||| |||| |||| Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634 Query 71707 GCCAGATTACAAACGGCTACCTCATTAGCATCG--GCATATTGTATAATTTCAGTGCAAA 71764 |||| ||| || ||||||| |||| | | | | ||| | | ||||||||||| | Sbjct 33633 GCCAAATTGCACACGGCTATTTCATC--CTTTGAAGAATACTCGACTATTTCAGTGCACA 33576 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 ||| ||| ||||||||||| | ||| || ||||| ||| ||||||||||||| Sbjct 33575 AATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCCT 33516 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 | || | | | || || |||||||| || || ||||| ||||| Sbjct 33515 TGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 |||||| |||| || ||||| | ||||||||||| || | || ||| || || || Sbjct 34050 GATCCTTCATAAGTTTCGTAGGTGCCTTCTTTTTCTGCCAACTCTACACTAGCTTCCAAC 33991 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 ||||| || || | ||||||||| || | | || | | | ||| || ||||| ||| Sbjct 33990 GCTCCGTAGTACAAGGTTTCGAATATTTGAATGTTTAATTTCTTTGCCTCAGGGCTTTCA 33931 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 || ||| | | | | |||||| || || || | |||||||| ||||| ||||| || Sbjct 33930 AACGGAAATCTCATCAAAATAAAAGCATCAGCGAGTCCTTGAATACCAATCCCGATGGG 33872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671060324365520