Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq159 105 7e-18 seq263 86.0 6e-12 seq463 82.4 8e-11 >seq159 Length=219009 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||||||||| || ||||| ||||| Sbjct 158790 CCACCGCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCTG 158731 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || ||||| || |||||| |||| ||||| |||||||| || || Sbjct 158730 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGA 158671 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || ||| || | | || | |||||| ||||||| || Sbjct 158670 ATACCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCACTGGGTTCCACC 158611 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| || || ||||| || |||||| Sbjct 158610 TCTAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAGATCTGCATA 158563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | || | ||||| || || || || || || ||||| || | Sbjct 158562 CCACCTCTGAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCCGAC 158503 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | |||||| | ||||||||||||| |||| ||||| |||||||| || || Sbjct 158502 AGTGTTCGGCCGTCTTCCAATTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGGGGA 158443 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||||| || | | ||| | |||||| | ||||| || Sbjct 158442 ATACCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATCGTGTCAGATGGTTCAAC 158384 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||||||||| ||||| || || | Sbjct 158241 CCACCACGAAGACGAAGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGAC 158182 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | |||||| | || || |||||| |||| ||||| |||||||| || || Sbjct 158181 AATGTTCGGCCGTCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGG 158122 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || || | | ||| | ||||| | ||| || ||| Sbjct 158121 ATACCTTCCTTATCTTGAATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACT 158062 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | || || || || || |||||| Sbjct 158061 TCCAATGTGATGGTCTTTCCTGTAAGGGTCTTGACAAAGATCTGCATA 158014 >seq263 Length=158529 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || || | || || |||||||| |||||||| Sbjct 64855 GTTGACTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTGTTTACCG 64914 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| ||| || || || || || || || || ||||| || || || Sbjct 64915 GCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTG 64974 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | || || ||||||| || |||| || | || || || ||||||||| Sbjct 64975 ACATTTTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGTCAATGTT 65034 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 65035 TTCACAAAGATCTGCAT 65051 >seq463 Length=112955 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 142997 TTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATC 143056 ||||| |||||||||||| | ||| || || ||||||||||| || ||| ||||| Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430 Query 143057 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCC 143116 | || |||||||| || || || || || ||||| || || || | | || Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 58370 Query 143117 ACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAAT 143176 | |||||| ||||||| || |||| || | || || || || | ||||| ||||| Sbjct 58369 ATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAA 58310 Query 143177 ATTTGCAT 143184 || ||||| Sbjct 58309 ATCTGCAT 58302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506954813132640