Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1672 96.9 5e-15 seq1326 91.5 2e-13 >seq1672 Length=38749 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | ||| | || ||| | | || || || || | || || || || || || Sbjct 32434 TGGATTGCTGATAAGAACTCTACTTTTGCTGAAAGGGTGATTGCTTTTGCAGCAGTTGAA 32493 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || || || || || || || ||||| ||||||| |||||||||||||| ||||| ||| Sbjct 32494 GGGATATTTTTCTCTGGAAGCTTTGCATCCATCTTCTGGCTCAAGAAGCGTGGACTTATG 32553 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 || || ||||| ||||||||| |||| ||||| || |||| Sbjct 32554 CCAGGCCTGACCTTTAGTAACGAGCTTATCTCTCGTGATGAGG 32596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 ||||| || || | |||||||||||||| | || |||||||| || ||||| || || Sbjct 32067 TTTATTTCCCATGTCTTGGCCTTCTTTGCAGCATCTGATGGAATTGTTAACGAAAACTTG 32126 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTTTACGGATTCCA 125248 || |||||| || || || | | || | || | |||||||||||||| || Sbjct 32127 GTGGAGCGATTCAGCCAGGAAGTG-CAAGTCACCGAAGCCCGATGCTTTTACGGATTTCA 32185 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 || ||| || || ||||| || ||||||||||| ||||||||| ||||||| Sbjct 32186 GATTGCGATGGAAAATGTGCATTCCGAAATGTACTCCCTTTTGATTGACACGTACATT 32243 >seq1326 Length=48828 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 96894 CCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAG 96953 || ||||| | || | || |||||||| ||||| || || || ||||| ||| | || Sbjct 33085 CCTGGCGCGTTCGCTATGTATTTGGAACCGTGGCATGCAGATGTCTTTGAATTTTTGGAC 33144 Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013 || |||||| |||| |||||| || || ||||| ||||||| ||| | ||| Sbjct 33145 TTGAAGAAAAACACTGGGAAAGAAGAGAATCGTGCAAGGGATTTGTTTTTTGCCATGTGG 33204 Query 97014 GTGCCAGATTTGTTCATGAAGCGCGTCAA---CGACGGTGGCTACTGGAGCCTAATGTGC 97070 | || ||||| ||||||||| | ||| | | |||||| ||||| | || ||||| Sbjct 33205 ATTCCCGATTTATTCATGAAGAGAGTCGAAAGCAACGGTG---ACTGGTGTCTGATGTGT 33261 Query 97071 CCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 || | || || | | | | ||| |||||| ||||||||||| Sbjct 33262 CCTAAAGAATCTCCTGATTTATTCGAAGTCTGGGGTGAAGAGTTTGA 33308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740972107017520