Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1672 96.9 5e-15
seq1326 91.5 2e-13
>seq1672
Length=38749
Score = 96.9 bits (106), Expect = 5e-15
Identities = 119/163 (73%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450
||||| | ||| | || ||| | | || || || || | || || || || || ||
Sbjct 32434 TGGATTGCTGATAAGAACTCTACTTTTGCTGAAAGGGTGATTGCTTTTGCAGCAGTTGAA 32493
Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510
|| || || || || || || ||||| ||||||| |||||||||||||| ||||| |||
Sbjct 32494 GGGATATTTTTCTCTGGAAGCTTTGCATCCATCTTCTGGCTCAAGAAGCGTGGACTTATG 32553
Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553
|| || ||||| ||||||||| |||| ||||| || ||||
Sbjct 32554 CCAGGCCTGACCTTTAGTAACGAGCTTATCTCTCGTGATGAGG 32596
Score = 84.2 bits (92), Expect = 3e-11
Identities = 127/178 (71%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189
||||| || || | |||||||||||||| | || |||||||| || ||||| || ||
Sbjct 32067 TTTATTTCCCATGTCTTGGCCTTCTTTGCAGCATCTGATGGAATTGTTAACGAAAACTTG 32126
Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTTTACGGATTCCA 125248
|| |||||| || || || | | || | || | |||||||||||||| ||
Sbjct 32127 GTGGAGCGATTCAGCCAGGAAGTG-CAAGTCACCGAAGCCCGATGCTTTTACGGATTTCA 32185
Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306
|| ||| || || ||||| || ||||||||||| ||||||||| |||||||
Sbjct 32186 GATTGCGATGGAAAATGTGCATTCCGAAATGTACTCCCTTTTGATTGACACGTACATT 32243
>seq1326
Length=48828
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/227 (69%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 96894 CCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAG 96953
|| ||||| | || | || |||||||| ||||| || || || ||||| ||| | ||
Sbjct 33085 CCTGGCGCGTTCGCTATGTATTTGGAACCGTGGCATGCAGATGTCTTTGAATTTTTGGAC 33144
Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013
|| |||||| |||| |||||| || || ||||| ||||||| ||| | |||
Sbjct 33145 TTGAAGAAAAACACTGGGAAAGAAGAGAATCGTGCAAGGGATTTGTTTTTTGCCATGTGG 33204
Query 97014 GTGCCAGATTTGTTCATGAAGCGCGTCAA---CGACGGTGGCTACTGGAGCCTAATGTGC 97070
| || ||||| ||||||||| | ||| | | |||||| ||||| | || |||||
Sbjct 33205 ATTCCCGATTTATTCATGAAGAGAGTCGAAAGCAACGGTG---ACTGGTGTCTGATGTGT 33261
Query 97071 CCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117
|| | || || | | | | ||| |||||| |||||||||||
Sbjct 33262 CCTAAAGAATCTCCTGATTTATTCGAAGTCTGGGGTGAAGAGTTTGA 33308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740972107017520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |