Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq159 111 1e-19
seq47 95.1 9e-15
seq463 82.4 6e-11
>seq159
Length=219009
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||||||||| ||||| || ||||| || || || | | | ||||| |||||
Sbjct 159223 ATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCTTCCAATTG 159164
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||||||||| | || | ||| || ||||| ||||| ||||| ||||| || ||
Sbjct 159163 TTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 159104
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| ||| ||| | || || || || || |||||| |||||||| ||||| || || ||
Sbjct 159103 GGCCTTGACATTCTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGGTCTTTCCAGT 159044
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
|| |||||| || || || |||||
Sbjct 159043 CAAAGTTTTGACGAAGATCTGCAT 159020
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/228 (69%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | | || | |||||||||||| || || || |||||||| |||||
Sbjct 158013 CCACCTCTGAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 157954
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | || || | ||| || ||||| | |||||||| |||| ||| |||
Sbjct 157953 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTT-GTCTGGGGGA 157895
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || ||| ||| ||| || |||| || || || ||| ||
Sbjct 157894 ATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCACC 157835
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || || || ||||| || || || ||||| || ||||||
Sbjct 157834 TCCAATGTGATAGTCTTTCCTGTAAGCGTCTTAACAAAGATCTGCATA 157787
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| || || || || ||||| || ||||| ||||| || | | | ||||| || ||
Sbjct 158995 ATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTG 158936
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
|| ||||| | || | ||| ||||| || ||||| ||||| || || ||| ||
Sbjct 158935 CTTTCCAGCAAAGATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTT 158876
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| ||| ||| |||| ||||| ||| | || || || | || |||||||| || ||
Sbjct 158875 GGCCTTAACATTTTCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGATGGTTTTGCCAGT 158816
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||||||||||||
Sbjct 158815 AAGGGTCTTGACAAAAATTTGCAT 158792
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||||||||| || || || || ||||| ||||| || | | | || || | |||
Sbjct 159680 ATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGCTGAGGGTACGGCCATCCTCAAGTTG 159621
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
|| ||||| | |||||||| |||||||| || |||||||| ||||| ||| ||
Sbjct 159620 CTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCTTCCTTGTCTTGAATCTT 159561
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| ||| || |||| || || || ||| || || || || || || || |||||
Sbjct 159560 GGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCACCTCCAATGTGATAGTCTTTCCTGT 159501
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || || || ||||||
Sbjct 159500 AAGCGTCTTAACGAAGATCTGCATA 159476
Score = 86.0 bits (94), Expect = 5e-12
Identities = 144/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||||||||| |||||||| || ||||| ||||| || | | | || || | |||
Sbjct 158767 ATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCTGAGGGTACGACCATCCTCAAGTTG 158708
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278
|| ||||| | || | ||| || || || ||||| ||||| || || || ||
Sbjct 158707 CTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATCTT 158648
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
||| ||| ||| | || || || || || ||| || ||||| || ||||| || || |
Sbjct 158647 TGC-CTTGACATTCTCGATCGTGTCACTGGGTTCCACCTCTAAAGTGATGGTCTTTCCAG 158589
Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364
||| || || || || || ||||||
Sbjct 158588 TCAACGTCTTGACGAAGATCTGCATA 158563
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/207 (70%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217
|||||||||||| |||||||| ||||| || | || | ||| ||| ||||||| ||
Sbjct 158218 ATGAAGGGTGGATTCTTTTTGAATGTTATAGT--CTGACAATGTTCGGCCGTCTTCCAAC 158161
Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277
|| || ||||| | || | ||| || || || || || ||||| || || |||
Sbjct 158160 TGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATC 158101
Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337
|| ||| ||| |||| ||||| || || || || || || ||||| || |||
Sbjct 158100 TTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCT 158041
Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || ||||| || ||||||
Sbjct 158040 GTAAGGGTCTTGACAAAGATCTGCATA 158014
>seq47
Length=390960
Score = 95.1 bits (104), Expect = 9e-15
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||||||||| || || ||||| ||||||||||| || | | | || || || ||
Sbjct 276730 ATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTG 276789
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||| ||||| | || | ||| || ||||| ||| || ||||| || || || ||
Sbjct 276790 TTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTT 276849
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| ||| ||| |||| ||||| || || ||| || || | || ||||| || || ||
Sbjct 276850 GGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGT 276909
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
||||| || |||||||| ||||||
Sbjct 276910 AAGAGTCTTGACAAAAATCTGCATA 276934
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/206 (70%), Gaps = 1/206 (0%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||||||||| || || ||||| ||||||||||| || | | | || || || ||
Sbjct 276274 ATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTG 276333
Query 15220 -TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278
||| ||||| | || | ||| || ||||| ||| || ||||| || || || |
Sbjct 276334 TTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCT 276393
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
|| ||| ||| |||| ||||| || || ||| || || | || ||||| || || |
Sbjct 276394 TGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAG 276453
Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364
| ||||| || |||||||| ||||||
Sbjct 276454 TAAGAGTCTTGACAAAAATCTGCATA 276479
>seq463
Length=112955
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235
||||| |||||||||||| || | || | || || | |||||| || || | |||
Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430
Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295
|| || || || || || ||||| || ||||| || ||| ||| ||| | ||
Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 58370
Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355
|| || || || ||| || || | || ||||||||||| || || ||||| || |||
Sbjct 58369 ATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAA 58310
Query 15356 ATTTGCATATTTGAA 15370
|| ||||| || |||
Sbjct 58309 ATCTGCATTTTCGAA 58295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362137699017282
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |