Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq159 111 1e-19 seq47 95.1 9e-15 seq463 82.4 6e-11 >seq159 Length=219009 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| ||||| || ||||| || || || | | | ||||| ||||| Sbjct 159223 ATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCTTCCAATTG 159164 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | || | ||| || ||||| ||||| ||||| ||||| || || Sbjct 159163 TTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 159104 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || || || || || |||||| |||||||| ||||| || || || Sbjct 159103 GGCCTTGACATTCTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGGTCTTTCCAGT 159044 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || |||||| || || || ||||| Sbjct 159043 CAAAGTTTTGACGAAGATCTGCAT 159020 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || | |||||||||||| || || || |||||||| ||||| Sbjct 158013 CCACCTCTGAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 157954 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | ||| || ||||| | |||||||| |||| ||| ||| Sbjct 157953 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTT-GTCTGGGGGA 157895 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||| ||| ||| || |||| || || || ||| || Sbjct 157894 ATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCACC 157835 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || ||||| || || || ||||| || |||||| Sbjct 157834 TCCAATGTGATAGTCTTTCCTGTAAGCGTCTTAACAAAGATCTGCATA 157787 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || ||||| || ||||| ||||| || | | | ||||| || || Sbjct 158995 ATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTG 158936 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | || | ||| ||||| || ||||| ||||| || || ||| || Sbjct 158935 CTTTCCAGCAAAGATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTT 158876 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| |||| ||||| ||| | || || || | || |||||||| || || Sbjct 158875 GGCCTTAACATTTTCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGATGGTTTTGCCAGT 158816 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| Sbjct 158815 AAGGGTCTTGACAAAAATTTGCAT 158792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || || ||||| ||||| || | | | || || | ||| Sbjct 159680 ATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGCTGAGGGTACGGCCATCCTCAAGTTG 159621 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | |||||||| |||||||| || |||||||| ||||| ||| || Sbjct 159620 CTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCTTCCTTGTCTTGAATCTT 159561 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || |||| || || || ||| || || || || || || || ||||| Sbjct 159560 GGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCACCTCCAATGTGATAGTCTTTCCTGT 159501 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||| Sbjct 159500 AAGCGTCTTAACGAAGATCTGCATA 159476 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| |||||||| || ||||| ||||| || | | | || || | ||| Sbjct 158767 ATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCTGAGGGTACGACCATCCTCAAGTTG 158708 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || ||||| | || | ||| || || || ||||| ||||| || || || || Sbjct 158707 CTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATCTT 158648 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || || || || || ||| || ||||| || ||||| || || | Sbjct 158647 TGC-CTTGACATTCTCGATCGTGTCACTGGGTTCCACCTCTAAAGTGATGGTCTTTCCAG 158589 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || || || |||||| Sbjct 158588 TCAACGTCTTGACGAAGATCTGCATA 158563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217 |||||||||||| |||||||| ||||| || | || | ||| ||| ||||||| || Sbjct 158218 ATGAAGGGTGGATTCTTTTTGAATGTTATAGT--CTGACAATGTTCGGCCGTCTTCCAAC 158161 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 || || ||||| | || | ||| || || || || || ||||| || || ||| Sbjct 158160 TGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATC 158101 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 || ||| ||| |||| ||||| || || || || || || ||||| || ||| Sbjct 158100 TTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCT 158041 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| || |||||| Sbjct 158040 GTAAGGGTCTTGACAAAGATCTGCATA 158014 >seq47 Length=390960 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || ||||| ||||||||||| || | | | || || || || Sbjct 276730 ATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTG 276789 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| ||||| | || | ||| || ||||| ||| || ||||| || || || || Sbjct 276790 TTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTT 276849 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| |||| ||||| || || ||| || || | || ||||| || || || Sbjct 276850 GGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGT 276909 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || |||||||| |||||| Sbjct 276910 AAGAGTCTTGACAAAAATCTGCATA 276934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || ||||| ||||||||||| || | | | || || || || Sbjct 276274 ATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTG 276333 Query 15220 -TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278 ||| ||||| | || | ||| || ||||| ||| || ||||| || || || | Sbjct 276334 TTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCT 276393 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 || ||| ||| |||| ||||| || || ||| || || | || ||||| || || | Sbjct 276394 TGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAG 276453 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || |||||||| |||||| Sbjct 276454 TAAGAGTCTTGACAAAAATCTGCATA 276479 >seq463 Length=112955 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| |||||||||||| || | || | || || | |||||| || || | ||| Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 || || || || || || ||||| || ||||| || ||| ||| ||| | || Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 58370 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 || || || || ||| || || | || ||||||||||| || || ||||| || ||| Sbjct 58369 ATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAA 58310 Query 15356 ATTTGCATATTTGAA 15370 || ||||| || ||| Sbjct 58309 ATCTGCATTTTCGAA 58295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362137699017282