Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq159 91.5 9e-14 seq47 84.2 1e-11 >seq159 Length=219009 Score = 91.5 bits (100), Expect = 9e-14 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||| || || || |||||||||||||| | | | || || ||||| || Sbjct 159908 ATGCAGAGTCGATTCCTTCTGAATATTGTAATCAGAGAGAGTACGTCCATCCTCCAACTG 159849 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAAT 33282 || ||| ||| || | ||| || ||||| | ||| || ||||| || || | | | Sbjct 159848 TTTACCAGCAAAAATAAGACGCTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTT 159789 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 ||| || || | | ||||||||| |||||| || |||| ||| || || ||||| Sbjct 159788 GGCC---TTGACATTCTCGATCGTGTCGCTGGGTTCTACCTCCAAAGTGATGGTCTTTCC 159732 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| || ||||| || ||||| Sbjct 159731 AGTCAAAGTCTTGACGAAGATCTGCAT 159705 >seq47 Length=390960 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| || ||||||||||| | || | || ||||| ||||||||| Sbjct 276510 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGACCATCCTCCAACTGCTTTCCA 276569 Query 33233 CTAAATATTAAACGTTGCTGGTC-CGTGGGTATGCCTTCT--TTTTCGCTAATCGCCTGT 33289 ||| || | ||| |||||||| ||||| | ||| || | || | | | ||| Sbjct 276570 GCAAAAATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTGGATCTTAGCC--- 276626 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || ||| ||| ||||| |||||| || || ||||| || || || || |||||| Sbjct 276627 TTGACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGA 276686 Query 33350 GTTTTTACGAAAATTTGCAT 33369 || || || ||| |||||| Sbjct 276687 GTCTTGAC--AAAATTGCAT 276704 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| || ||||||||||| | | | || ||||| || || ||| Sbjct 276737 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTACCA 276796 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289 ||| || | ||| |||||||| | || || ||||| || || | | | ||| Sbjct 276797 GCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCC--- 276853 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || ||| ||| ||||| |||||| || || ||||| || || || || |||||| Sbjct 276854 TTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGA 276913 Query 33350 GTTTTTACGAAAATTTGCAT 33369 || || || ||||| ||||| Sbjct 276914 GTCTTGACAAAAATCTGCAT 276933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318741072270996