Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1672 89.7 4e-13 >seq1672 Length=38749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 13187 ATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATA 13246 || |||||||| ||| || || || |||||||| || || || || | ||| || || Sbjct 32582 ATAAGCTCGTTACTAAAGGTCAGGCCTGGCATAAGTCCACGCTTCTTGAGCCAGAAGATG 32523 Query 13247 GCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCA 13306 | ||||| || || |||||||| ||||||||||||||||| || |||| ||||||| Sbjct 32522 GATGCAAAGCTTCCAGAGAAAAATATCCCTTCAACTGCTGCAAAAGCAATCACCCTTTCA 32463 Query 13307 CCATACGTA 13315 || | ||| Sbjct 32462 GCAAAAGTA 32454 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 13396 ATAAtttttttCCTTACTG-----TCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 ||||||| || |||| ||| || ||| || || || ||||| | | |||||| Sbjct 32272 ATAATTTATTACCTTTCTGCAACATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATT 32213 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || ||||| | |||||||||||| || || || || ||||| |||| || || | || Sbjct 32212 TCGGAATGCACATTTTCCATCGCAATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACT 32153 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 || ||||| | |||| || | |||||||||||||| || || ||| || ||| Sbjct 32152 TGCACTTCCTGGCTGAATCGCTCCACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCA 32093 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttC 13605 || || || | | || ||||||||| |||| Sbjct 32092 AAGAAGGCCAAGACATGGGAAATAAATTTCCTTTC 32058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430933015073604