Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq47 87.8 2e-12 seq463 86.0 5e-12 >seq47 Length=390960 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| || ||||||||||||||||||||||| || || || | ||||||| || Sbjct 276730 ATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAG-AAAGGGTACGGCCATCCTCCAACT 276788 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | ||||| | |||| | ||||||||| || || | | |||||| ||| || | Sbjct 276789 GTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCT 276848 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | ||||| || | | ||| ||||| || ||||| || || | Sbjct 276849 TGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAG 276908 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || |||||||||||||| Sbjct 276909 TAAGAGTCTTGACAAAAATCTGCAT 276933 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| || ||||||||||||||||||||||| || || || | ||||||| || Sbjct 276274 ATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGA-AAGGGTACGGCCATCCTCCAACT 276332 Query 48582 GCTT-ACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATT 48640 | || ||| | |||| | ||||||||| || || | | |||||| ||| || Sbjct 276333 GTTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATC 276392 Query 48641 TTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 || ||| | | | ||||| || | | ||| ||||| || ||||| || || Sbjct 276393 TTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCA 276452 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || |||||||||||||| Sbjct 276453 GTAAGAGTCTTGACAAAAATCTGCAT 276478 >seq463 Length=112955 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAA 48595 ||||||||||||||||||| | | | ||| || ||||| || || || ||| | | Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGT-GTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAG 58433 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || |||||||||||| || | | ||||||||| || || ||||| | | Sbjct 58432 ATCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTC 58373 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || || | | ||| ||| | || ||||||||||| ||||| ||||| || Sbjct 58372 TCGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACG 58313 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 58312 AAAATCTGCAT 58302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421202930141402