Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4812 100 1e-16 seq2144 98.7 5e-16 seq977 98.7 5e-16 seq328 98.7 5e-16 seq3249 91.5 8e-14 seq437 82.4 4e-11 seq93 82.4 4e-11 >seq4812 Length=13552 Score = 100 bits (110), Expect = 1e-16 Identities = 78/93 (84%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| |||||| |||||||| ||| |||||||||| ||||||| ||||||||| Sbjct 5418 AAATAAGCAAAAAT---ATTGGCCCGTGAGGGGATCGAACCCGCGACCTTGGCGTTATTA 5474 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||||||||||||| ||||| Sbjct 5475 GCACCACGCTCTAACCAACTGAGCTAACGGGCC 5507 >seq2144 Length=30672 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||| ||||| ||| |||||||||| ||||||| ||||||||||||| ||| Sbjct 11638 AAAAATGAAAT-GGCCCGTGAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 11580 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||| ||||| Sbjct 11579 CTCTAACCAGCTGAGCTAACGGGCC 11555 >seq977 Length=63092 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| |||||| ||| |||||||||| ||||||| ||||||||||||| ||| Sbjct 34782 AAAAAT-AAAGTGGCCCGTGAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 34724 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||| ||||| Sbjct 34723 CTCTAACCAGCTGAGCTAACGGGCC 34699 >seq328 Length=140176 Score = 98.7 bits (108), Expect = 5e-16 Identities = 78/94 (83%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 || || |||||||| | |||||| ||| |||||||||| ||||||| |||||||| Sbjct 23221 GATTTGATAAAAAA----AGTGGCCCGTGAGGGGATCGAACCCGCGACCTTGGCGTTATT 23276 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||| |||||||||||||| ||||| Sbjct 23277 AGCACCACGCTCTAACCAACTGAGCTAACGGGCC 23310 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||| ||| |||||||||| ||||||| ||||||||||||| ||||||| | Sbjct 22906 AAAGTGGCCCGTGAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAA- 22848 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| ||||| Sbjct 22847 CAACTGAGCTAACGGGCC 22830 >seq3249 Length=20292 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| ||| |||||||||| ||||||| ||||||||||||| ||||||| |||| | Sbjct 13604 TGGCCCGTGAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAGC 13545 Query 11516 TGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 13544 TGAGCTAACGGGCC 13531 >seq437 Length=118529 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| ||| Sbjct 19577 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGCGGG 19636 Query 11528 CC 11529 || Sbjct 19637 CC 19638 >seq93 Length=313529 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| || | |||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 114012 AAAAGCATAATGGCCCGCGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGC 113953 Query 11506 TCTRACCAACTGAGCTA 11522 ||| ||||||||||||| Sbjct 113952 TCTAACCAACTGAGCTA 113936 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261461236540552