Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1326 122 1e-22 seq1672 113 6e-20 >seq1326 Length=48828 Score = 122 bits (134), Expect = 1e-22 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || |||||||||||||| || ||||||| || |||||||| || || | ||| | Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||| || ||||||||||| ||||| |||||||| ||||| || |||| | |||| Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250 Query 62457 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62493 ||||| |||||||| | || ||||| | ||||| Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTA 34213 Score = 107 bits (118), Expect = 2e-18 Identities = 197/287 (69%), Gaps = 9/287 (3%) Strand=Plus/Minus Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||| ||||| | || || ||||| || || ||||| | || || || ||| Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694 Query 62844 TTCAGTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAAGGCAACAGAT 62900 |||| ||| |||||| || | ||| | | ||| |||| |||| |||| |||| Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634 Query 62901 GCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 |||| ||| || ||||||| |||| | | | | ||| | | ||| |||||||| Sbjct 33633 GCCAAATTGCACACGGCTATTTCATCCTTTGAA---GAATACTCGACTATTTCAGTGCAC 33577 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 | ||| ||| ||||| ||||| | ||| || ||||| ||| |||||||||||| Sbjct 33576 AAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCC 33517 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 || || | | | |||| || |||||||| || || ||||| ||||| Sbjct 33516 TTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470 Score = 105 bits (116), Expect = 8e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 ||| ||||||||||| || | || || ||||| || ||||| || ||||| |||||||| Sbjct 32200 TTTCTTTGTTTCCTTATGCAAGTTAGAAACGGCAATCCTGGCAGCAAGAATCGCATAATC 32141 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 |||||| | |||||| |||| || || | || || |||| | |||| | ||| || || Sbjct 32140 CGGATGGTTTGTAGTTAAAGTAGCAGCAGTCTCAGCAGCCAAATTGTCAAGTTCCACAGT 32081 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64144 ||| |||||| || | || ||| ||||| | || ||| | ||| || | | Sbjct 32080 TGTAACTCCAGAGTACAAGCCACTAATCACCTTGAGAGTGATTGCAGGAGGGTCCACAAA 32021 Query 64145 ATCCGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAA 64198 |||| |||| | ||||| || || |||| |||||| || || || ||||| Sbjct 32020 ATCCATGTTAAGCCCATAGCA-AAGCTTCTCAATACGGCTGGTTATCTTGTCAAA 31967 >seq1672 Length=38749 Score = 113 bits (124), Expect = 6e-20 Identities = 162/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 ||| |||| || || || |||||||| |||||||| ||||| | ||||| || || Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 |||||||||||||| || |||| || ||||| | || ||||| | ||||| || Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 | |||| ||||| || || ||||| ||| |||||||| || ||||| ||||| || Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070 Query 33744 AAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATTGATATC 33788 ||| | |||| || || | || || || ||||||| | |||| Sbjct 32069 AAATTTCCTTTCATCCGGCTTCAGCTTTTGATCCCAATCAGTAGTATC 32022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || || | ||| ||||||||||| |||||||| || ||||| ||||| || ||||| | | Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 ||||| |||| ||| || || ||||||| ||| || || Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCT 31827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622873988130320