Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq159 95.1 1e-14 seq263 91.5 1e-13 >seq159 Length=219009 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | ||||| ||| | || || | || || ||| | Sbjct 158791 AATGCAAATTTTTGTCAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGCCTTC 158850 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || || |||||| || || |||||||| || || ||||| Sbjct 158851 CGACACCATCGAAAATGTTAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCA 158910 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | || || | | || ||||| | ||||||| | | | ||||||| || || Sbjct 158911 ACAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAA 158970 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 || ||||| ||||||||| | ||| Sbjct 158971 TATCCAAAAGGAATCTACACTCCAT 158995 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || |||||||| | || || | || || || ||| Sbjct 158564 ATGCAGATCTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTAGAGGTGGAACCCAGT 158623 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | ||||| |||||| || || ||||| || || || ||||| Sbjct 158624 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 158683 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | || |||||||| || |||| | | | ||||||| || || Sbjct 158684 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTCAGCGACTACAAT 158743 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || ||||||||||| || ||||| Sbjct 158744 ATCCAAAAAGAATCCACCCTTCAT 158767 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || |||||||| | || ||| | || || || ||| Sbjct 159020 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTAGAGGTAGAACCCAGT 159079 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 159080 GACACGATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 159139 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||| ||| | ||||||| | | | | || |||||| Sbjct 159140 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGACGTACCCTTTCAGACTATAAC 159199 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||| |||||||| || ||||| Sbjct 159200 ATTCAGAAAGAATCCACCCTTCAT 159223 >seq263 Length=158529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||||| ||||| ||| | || ||| | || || || ||| Sbjct 65051 ATGCAGATCTTTGTGAAAACATTGACTGGGAAAACTATCACCCTTGAGGTTGAACCCAGT 64992 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| ||||| ||||| || || || || || || ||| Sbjct 64991 GATACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAA 64932 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | | ||| || || |||||||||| || | | | || || || ||| Sbjct 64931 CAGCGTTTGATCTTTGCCGGTAAACAGCTCGAAGATGGTAGGACCCTTAGTGACTACAAC 64872 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| || || || | ||| | ||| | || | |||| ||| Sbjct 64871 ATTCAAAAGGAGTCAACGTTGCATCTTGTGCTCAGGCTTCGAGGTGGA 64824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429886734977310