Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq47 96.9 3e-15 seq263 93.3 3e-14 seq159 93.3 3e-14 >seq47 Length=390960 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||||||||| |||||||| || | | ||| | | ||| Sbjct 276722 AGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCC 276781 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| ||||| || ||| ||||||| ||||| ||||| || | || || || || Sbjct 276782 TCCAACTGTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCC 276841 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||| ||| || | ||||||| Sbjct 276842 TGGATCTTGGC--CTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGG 276899 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || ||||||||||||||||| Sbjct 276900 TCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276933 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || || | ||| || || ||||||||||| |||||||| || | Sbjct 276251 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 276310 Query 16769 ATGGTTTTGGCGTCCTCCAATTG-TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | |||||||| || ||| || ||| ||||||| ||||| ||||| || Sbjct 276311 AGGGTACGGCCATCCTCCAACTGTTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGG 276370 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || || || || || || |||||| | | | ||||| | ||| ||| Sbjct 276371 GATCCCTTCCTTATCCTGGATCTTGGC--CTTCACATTTTCAATGGTGTCACTGGGTTCC 276428 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || || ||||||||||||||||| Sbjct 276429 ACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276478 >seq263 Length=158529 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| ||||| || || | ||||| ||| ||||||||||| ||||||||||| Sbjct 64825 CCACCTCGAAGCCTGAGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACTA 64884 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | ||||| || ||| | || | ||||||||||| || Sbjct 64885 AGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGGG 64944 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | ||| || | ||| || Sbjct 64945 ATTCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTTTCGATAGTATCACTGGGTTCAA 65002 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 65003 CCTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCACAAAGATCTGCAT 65051 >seq159 Length=219009 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || || | ||| || ||||| || || || ||||| ||||| | Sbjct 159246 CCACCTCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAA 159187 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||||||||||||| ||| | ||||| ||||| ||||| || Sbjct 159186 AGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 159127 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| | ||| || Sbjct 159126 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCGATCGTGTCACTGGGTTCTA 159069 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| ||||| |||| |||||||| || |||||||| Sbjct 159068 CCTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 159020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/215 (70%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || |||||||||||||| |||||||||||| | |||| | | ||| Sbjct 159460 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCC 159401 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || ||| | || | ||||| ||||| || | ||| || ||||| Sbjct 159400 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 159341 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| || | |||||| | Sbjct 159340 TGGATCTTAGC--CTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCG 159283 Query 16902 T-TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||| |||| || |||||||| |||||||| Sbjct 159282 TCTTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 159248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || |||||||||||||| |||||||||||| | ||| | | ||| Sbjct 157771 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCATCC 157712 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || ||| | || | ||||| ||||| || | ||| || ||||| Sbjct 157711 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 157652 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| || | |||||| | Sbjct 157651 TGGATCTTAGC--CTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCG 157594 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| |||| || |||||||| |||||||| Sbjct 157593 TCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 157560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405041582231980