Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8230 140 2e-28 seq4285 140 2e-28 seq3111 140 2e-28 seq1470 140 2e-28 seq4448 138 8e-28 seq463 100 2e-16 seq159 98.7 7e-16 seq6033 91.5 1e-13 seq263 86.0 4e-12 >seq8230 Length=5585 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1796 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1737 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1736 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1702 >seq4285 Length=15357 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9667 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9608 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9607 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9573 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 14553 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 14612 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 14613 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 14647 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7357 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 7298 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 7297 GGTCATATTTAGCCTTA 7281 >seq3111 Length=21209 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3087 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3028 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3027 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2993 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8009 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8068 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8069 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8103 Score = 122 bits (134), Expect = 6e-23 Identities = 74/77 (96%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG- 716 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 715 TGTCATATTTAGCCTTA 699 >seq1470 Length=43379 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 38264 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 38323 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 38324 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 38358 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 40546 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 40605 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 40606 GGTCATATTTAGCCTTA 40622 >seq4448 Length=14809 Score = 138 bits (152), Expect = 8e-28 Identities = 87/94 (93%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG----GGGTAATCTCGTT 25957 ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| Sbjct 7251 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGAATCTCGTT 7192 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 7191 AATCCATTCATGCGCGTCACTAATTAGATGACGA 7158 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4944 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 4885 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 4884 GGTCATATTTAGCCTTA 4868 >seq463 Length=112955 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 |||||||||| |||||||| || | | | | || || | ||||||||||||||| | Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | | || || ||||| | ||||| || || |||||| || || ||| ||||||| Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 58372 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 || || || | ||| || || | || || ||||||||||| | |||||| |||| Sbjct 58371 CGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGA 58312 Query 38308 ATATCTGCATGTT 38320 | |||||||| || Sbjct 58311 AAATCTGCATTTT 58299 >seq159 Length=219009 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||| ||||| ||||| ||||||||||||||||| | | |||| | || || || || Sbjct 159908 ATGCAGAGTCGATTCCTTCTGAATATTGTAATCAGAGAGAGTACGTCCATCCTCCAACTG 159849 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||| || ||||| || || || ||||| || | ||| | ||||| || || || || Sbjct 159848 TTTACCAGCAAAAATAAGACGCTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTT 159789 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||||| || || || | ||| || || || || || || || || || Sbjct 159788 GGCCTTGACATTCTCGATCGTGTCGCTGGGTTCTACCTCCAAAGTGATGGTCTTTCCAGT 159729 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 ||| || || ||||| |||||||| Sbjct 159728 CAAAGTCTTGACGAAGATCTGCAT 159705 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| | ||| | || | ||| || || |||||||| |||||||| || Sbjct 157558 CCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTG 157499 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || || || ||||| ||||| || || ||||||||||| | ||| Sbjct 157498 AGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGTTGATCTGGGGGA 157439 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || ||| ||| ||||||||| | || ||| || | || || Sbjct 157438 ATGCCTTCCTTATCTTGAATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACC 157379 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | || |||||||| ||||||||| Sbjct 157378 TCAAGGGTGATCGTCTTGCCAGTGAGTGTCTTCACGAAAATCTGCATG 157331 >seq6033 Length=10364 Score = 91.5 bits (100), Expect = 1e-13 Identities = 75/88 (85%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG--GGGGTAATCTCGTTAATCCT 25963 |||| |||||||||||| ||||||||||||||||||| | | |||||||||| || Sbjct 9807 CCGTCCCCTTGGCTGTG--TTCGCTAGATAGTAGATAGACAGTGGAATCTCGTTATCCCA 9750 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||| |||||||||||||||| Sbjct 9749 TTCATGCGCG-AACTAATTAGATGACGA 9723 >seq263 Length=158529 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/202 (70%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||||||||| ||||| ||| | | | || || | ||||| |||||||| Sbjct 64860 CTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAA 64919 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | || ||||| || | ||||| || || ||||| || || ||| ||||| Sbjct 64920 GATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 64979 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || |||||| | |||||| || | || |||||||| || ||||| |||||||| Sbjct 64980 TTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCAC 65039 Query 38306 GAATATCTGCATGT-TTTACAA 38326 || |||||||| | || |||| Sbjct 65040 AAAGATCTGCATCTGTTCACAA 65061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334908819447062