Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1326 122 1e-22 seq1672 107 2e-18 >seq1326 Length=48828 Score = 122 bits (134), Expect = 1e-22 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || |||||||||||||| || ||||||| || |||||||| || || | ||| | Sbjct 34369 ACCTGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATG 34310 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||| || ||||||||||| ||||| |||||||| ||||| || |||| | |||| Sbjct 34309 GACTCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAA 34250 Query 62312 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62348 ||||| |||||||| | || ||||| | ||||| Sbjct 34249 GAATTTCGAAGACCGTGTTGACTTATTTTCTGTTTTA 34213 Score = 111 bits (122), Expect = 2e-19 Identities = 198/287 (69%), Gaps = 9/287 (3%) Strand=Plus/Minus Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698 ||||| ||||| | || || ||||| || || ||||| | || || || ||| Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694 Query 62699 TTCAGTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAACAGAT 62755 |||| ||| |||||| || | ||| | | ||| |||| |||| |||| |||| Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634 Query 62756 GCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 |||| ||| || ||||||| |||| | | | | ||| | | ||| |||||||| Sbjct 33633 GCCAAATTGCACACGGCTATTTCATCCTTTGAA---GAATACTCGACTATTTCAGTGCAC 33577 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 | ||| ||| ||||||||||| | ||| || ||||| ||| |||||||||||| Sbjct 33576 AAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCC 33517 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 || || | | | |||| || |||||||| || || ||||| ||||| Sbjct 33516 TTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 63820 tttttttgtttctttgtgtagatttgATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 ||| |||||||| || || | || || ||||| || || || || ||||| |||||||| Sbjct 32200 TTTCTTTGTTTCCTTATGCAAGTTAGAAACGGCAATCCTGGCAGCAAGAATCGCATAATC 32141 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 |||||| | |||||| |||| || || | || || |||| | |||| | ||| || || Sbjct 32140 CGGATGGTTTGTAGTTAAAGTAGCAGCAGTCTCAGCAGCCAAATTGTCAAGTTCCACAGT 32081 Query 63940 TGTTACACCA 63949 ||| || ||| Sbjct 32080 TGTAACTCCA 32071 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| |||||||||||||| || || |||| | ||||||| || || | ||| | || Sbjct 34743 TCCAGCCGTAAAAATGCATTGAGGTCAGCTTGGCAAAACTCGGTTCAGCCACATGCAAAT 34684 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||||||| || || || || ||||| || ||||||||||| | |||| || Sbjct 34683 TGAGAGATTGAGACTGGTCAATAAATGCTCCTCTATCTGCAGCCATATCAATAACTGTTC 34624 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA 62064 || | ||||||||| | ||| || || Sbjct 34623 GCTGAGAAATTTCCCAGACAGTCTTGTA 34596 >seq1672 Length=38749 Score = 107 bits (118), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 ||| |||| || || ||||||||||| |||||||| ||||| | ||||| || || Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 || ||||||||||| ||||||| || ||||| | || ||||| | ||||| || Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 | || ||||| || || ||||| ||| |||||||| || ||||| ||||| || Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070 Query 33101 AAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATTGATATC 33145 ||| | |||| || || | || || || ||||||| | |||| Sbjct 32069 AAATTTCCTTTCATCCGGCTTCAGCTTTTGATCCCAATCAGTAGTATC 32022 Score = 100 bits (110), Expect = 4e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || || | ||||||||||||||| |||||||| || ||||| ||||| || ||||| | | Sbjct 31924 TTTGAAAGATCCACTTCTTCCACAGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATTTGC 31865 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATT 33266 ||||| |||||||| ||||| || |||| ||| || || ||||||| | ||| | Sbjct 31864 CAGATATCATGATACTGAATGGGGAAAACAACGAACCTTCGAGGATTTTCTCGAAGTAGA 31805 Query 33267 GGTTC 33271 ||||| Sbjct 31804 GGTTC 31800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633557532399200