Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq159 116 3e-21
seq263 107 2e-18
seq47 100 2e-16
>seq159
Length=219009
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || | ||||| | || |||||| | |||
Sbjct 157332 ATGCAGATTTTCGTGAAGACACTCACTGGCAAGACGATCACCCTTGAGGTGGAGCCTTCT 157391
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| |||| ||||| | ||| || || ||||| ||||| || || ||
Sbjct 157392 GACACTATCGAAAATGTGAAGGCAAAGATTCA-AGATAAGGAAGGCATTCCCCCAGATCA 157450
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || ||||| || || || || ||||||| |||||| | |||| |||||
Sbjct 157451 ACAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAA 157510
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| ||||| ||||| || || ||| | || ||
Sbjct 157511 TATCCAAAAGGAATCTACACTCCATCTCGTCCT 157543
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || ||||||| | || || || |
Sbjct 159705 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTAGAACCCAGC 159764
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| || || ||||| ||||| || ||||||
Sbjct 159765 GACACGATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 159824
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| |||||||||| || ||||| || || |||| || ||| | |||||||||
Sbjct 159825 CAGCGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGACGTACTCTCTCTGATTACAAT 159884
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
||||| || ||||| || || ||| | || || | || | ||||||
Sbjct 159885 ATTCAGAAGGAATCGACTCTGCATCTTGTCCTTCGTCTTCGTGGAGGA 159932
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || | ||||| | || |||||| | |||
Sbjct 157560 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACGATCACCCTTGAGGTGGAGCCTTCT 157619
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| || ||| ||||| ||||| ||||| || |||||
Sbjct 157620 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 157679
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||| || || ||| | || |||| || || | |||| |||||
Sbjct 157680 CAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAAC 157739
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| || ||||| || ||| | || || | || ||||| ||
Sbjct 157740 ATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCAGAGGTGG 157786
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || || ||||||| | || ||||| | |
Sbjct 158564 ATGCAGATCTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTAGAGGTGGAACCCAGT 158623
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| ||| ||| || || ||||| ||||| || || ||
Sbjct 158624 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 158683
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||| || || ||| | || |||| ||| || | |||| ||||||
Sbjct 158684 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTCAGCGACTACAAT 158743
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||||||||| || ||| | || ||
Sbjct 158744 ATCCAAAAAGAATCCACCCTTCATCTCGTCCT 158775
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || |||||||| || || ||||||| | || || || | |
Sbjct 159020 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTAGAGGTAGAACCCAGT 159079
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| ||||| ||||| || |||||
Sbjct 159080 GACACGATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 159139
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| |||| ||||| ||||||||||| ||||||| || || | || || ||
Sbjct 159140 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGACGTACCCTTTCAGACTATAAC 159199
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| ||||||||||| || ||| | || ||
Sbjct 159200 ATTCAGAAAGAATCCACCCTTCATCTCGTCCT 159231
Score = 111 bits (122), Expect = 1e-19
Identities = 162/228 (71%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAA-TCCATCACAGTCGAAGTGGAGTCGTC 25057
||||| || ||||| ||||||||||| || ||| | ||||| | || |||||| | ||
Sbjct 159248 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAGACGATCACCCTTGAGGTGGAGCCTTC 159307
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| || || | ||| || ||| ||||| ||||| ||||| || |||||
Sbjct 159308 TGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 159367
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||| || || ||| | || |||| || || | |||| |||||
Sbjct 159368 GCAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTACAA 159427
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| || ||||| || ||| | || || | || ||||| ||
Sbjct 159428 CATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCAGAGGTGG 159475
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || |||||||| | ||||||||| | |||
Sbjct 158015 ATGCAGATCTTTGTCAAGACCCTTACAGGAAAGACCATCACATTGGAAGTGGAGCCCTCT 158074
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | || | ||| || || ||||| || || || || ||
Sbjct 158075 GACACCATCGAAAATGTTAAGGCTAAGATTCAA-GATAAGGAAGGTATCCCCCCAGATCA 158133
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||| || || || || ||||| | || || || || || ||
Sbjct 158134 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGAACATTGTCAGACTATAA 158193
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||||||||||| || ||| | || ||
Sbjct 158194 CATTCAAAAAGAATCCACCCTTCATCTCGTCCT 158226
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || | |||||| | || ||||| | |||
Sbjct 159477 ATGCAGATCTTCGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCT 159536
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | ||| | || | ||| ||||| ||||| || || || |||||
Sbjct 159537 GACACTATCGAAAACGTTAAGGCCAAGATTCAA-GACAAGGAAGGAATCCCCCCAGACCA 159595
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || ||||| || || ||| | || |||| || || | |||| |||||
Sbjct 159596 ACAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAA 159655
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || ||||| || ||| | || ||
Sbjct 159656 TATCCAGAAGGAGTCCACCCTTCATCTCGTCCT 159688
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/228 (70%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || | |||||| | || ||||| | |||
Sbjct 157788 ATGCAGATCTTTGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCT 157847
Query 25059 GACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||||| | | | | || || | ||| || || ||||| ||||| || || ||
Sbjct 157848 GACACTATCGAAAACGTTAAGGCCAAGATTCA-AGATAAGGAAGGAATTCCCCCAGA-CA 157905
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || ||||| || || ||| | || |||| || || | |||| |||||
Sbjct 157906 ACAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAA 157965
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || ||||| || ||| | || || | || ||||| ||
Sbjct 157966 CATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCGTCTCAGAGGTGG 158013
>seq263
Length=158529
Score = 107 bits (118), Expect = 2e-18
Identities = 165/234 (71%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 24994 GAACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052
||||| ||||| || ||||| || || ||||| || ||| | ||||| | || || ||
Sbjct 65057 GAACAGATGCAGATCTTTGTGAAAACATTGACTGGGAAAACTATCACCCTTGAGGTTGAA 64998
Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
| ||| |||||||| | ||| || ||| ||||| || || || || ||
Sbjct 64997 CCCAGTGATACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCA 64938
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
||||||||||| | || |||||||| ||||| | ||||||| | | || | | ||
Sbjct 64937 GACCAACAGCGTTTGATCTTTGCCGGTAAACAGCTCGAAGATGGTAGGACCCTTAGTGAC 64878
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
||||| |||||||| || || ||| | ||| | ||||| ||||| |||| |||
Sbjct 64877 TACAACATTCAAAAGGAGTCAACGTTGCATCTTGTGCTCAGGCTTCGAGGTGGA 64824
>seq47
Length=390960
Score = 100 bits (110), Expect = 2e-16
Identities = 146/203 (72%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | || || || ||||||| |||| |||||| | ||
Sbjct 276249 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAGCCTTCA 276190
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| || |||| || ||| || || |||||||| ||||| |||||
Sbjct 276189 GACACTATTGAAAATGTGAAAGGCAAGATCCAGGATAAGGAAGGGAT-CCACCAGACCAG 276131
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| |||||||||| ||||| | || |||| || || | ||||||||||
Sbjct 276130 CAGCGTCTTATTTTTGCAA--AAACAGTG-GAGGATGGCCGTACCTTCTCCGATTACAAT 276074
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|||||||| || || || || ||
Sbjct 276073 ATTCAAAAGGAGTCAACTCTTCA 276051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433278346298630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |