Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq159 116 3e-21 seq263 107 2e-18 seq47 100 2e-16 >seq159 Length=219009 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | || |||||| | ||| Sbjct 157332 ATGCAGATTTTCGTGAAGACACTCACTGGCAAGACGATCACCCTTGAGGTGGAGCCTTCT 157391 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| |||| ||||| | ||| || || ||||| ||||| || || || Sbjct 157392 GACACTATCGAAAATGTGAAGGCAAAGATTCA-AGATAAGGAAGGCATTCCCCCAGATCA 157450 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || || ||||||| |||||| | |||| ||||| Sbjct 157451 ACAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAA 157510 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| ||||| || || ||| | || || Sbjct 157511 TATCCAAAAGGAATCTACACTCCATCTCGTCCT 157543 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || || || | Sbjct 159705 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTAGAACCCAGC 159764 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| || || ||||| ||||| || |||||| Sbjct 159765 GACACGATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 159824 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||||||||| || ||||| || || |||| || ||| | ||||||||| Sbjct 159825 CAGCGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGACGTACTCTCTCTGATTACAAT 159884 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| || ||||| || || ||| | || || | || | |||||| Sbjct 159885 ATTCAGAAGGAATCGACTCTGCATCTTGTCCTTCGTCTTCGTGGAGGA 159932 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | || |||||| | ||| Sbjct 157560 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACGATCACCCTTGAGGTGGAGCCTTCT 157619 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 157620 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 157679 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || ||| | || |||| || || | |||| ||||| Sbjct 157680 CAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAAC 157739 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || ||||| || ||| | || || | || ||||| || Sbjct 157740 ATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCAGAGGTGG 157786 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || ||||| | | Sbjct 158564 ATGCAGATCTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTAGAGGTGGAACCCAGT 158623 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| ||| ||| || || ||||| ||||| || || || Sbjct 158624 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 158683 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || ||| | || |||| ||| || | |||| |||||| Sbjct 158684 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTCAGCGACTACAAT 158743 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || ||| | || || Sbjct 158744 ATCCAAAAAGAATCCACCCTTCATCTCGTCCT 158775 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| || || ||||||| | || || || | | Sbjct 159020 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTAGAGGTAGAACCCAGT 159079 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 159080 GACACGATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 159139 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||| ||||||||||| ||||||| || || | || || || Sbjct 159140 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGACGTACCCTTTCAGACTATAAC 159199 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||||||||| || ||| | || || Sbjct 159200 ATTCAGAAAGAATCCACCCTTCATCTCGTCCT 159231 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAA-TCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||| || ||||| ||||||||||| || ||| | ||||| | || |||||| | || Sbjct 159248 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAGACGATCACCCTTGAGGTGGAGCCTTC 159307 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 159308 TGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 159367 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || ||| | || |||| || || | |||| ||||| Sbjct 159368 GCAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTACAA 159427 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || ||||| || ||| | || || | || ||||| || Sbjct 159428 CATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCAGAGGTGG 159475 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||||||| | ||||||||| | ||| Sbjct 158015 ATGCAGATCTTTGTCAAGACCCTTACAGGAAAGACCATCACATTGGAAGTGGAGCCCTCT 158074 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| || || ||||| || || || || || Sbjct 158075 GACACCATCGAAAATGTTAAGGCTAAGATTCAA-GATAAGGAAGGTATCCCCCCAGATCA 158133 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || || ||||| | || || || || || || Sbjct 158134 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGAACATTGTCAGACTATAA 158193 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||||| || ||| | || || Sbjct 158194 CATTCAAAAAGAATCCACCCTTCATCTCGTCCT 158226 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | |||||| | || ||||| | ||| Sbjct 159477 ATGCAGATCTTCGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCT 159536 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| | || | ||| ||||| ||||| || || || ||||| Sbjct 159537 GACACTATCGAAAACGTTAAGGCCAAGATTCAA-GACAAGGAAGGAATCCCCCCAGACCA 159595 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || || ||| | || |||| || || | |||| ||||| Sbjct 159596 ACAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAA 159655 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || ||| | || || Sbjct 159656 TATCCAGAAGGAGTCCACCCTTCATCTCGTCCT 159688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | |||||| | || ||||| | ||| Sbjct 157788 ATGCAGATCTTTGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCT 157847 Query 25059 GACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||| | | | | || || | ||| || || ||||| ||||| || || || Sbjct 157848 GACACTATCGAAAACGTTAAGGCCAAGATTCA-AGATAAGGAAGGAATTCCCCCAGA-CA 157905 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || || ||| | || |||| || || | |||| ||||| Sbjct 157906 ACAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAA 157965 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | || || | || ||||| || Sbjct 157966 CATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCGTCTCAGAGGTGG 158013 >seq263 Length=158529 Score = 107 bits (118), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 24994 GAACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 ||||| ||||| || ||||| || || ||||| || ||| | ||||| | || || || Sbjct 65057 GAACAGATGCAGATCTTTGTGAAAACATTGACTGGGAAAACTATCACCCTTGAGGTTGAA 64998 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||| |||||||| | ||| || ||| ||||| || || || || || Sbjct 64997 CCCAGTGATACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCA 64938 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||||||||| | || |||||||| ||||| | ||||||| | | || | | || Sbjct 64937 GACCAACAGCGTTTGATCTTTGCCGGTAAACAGCTCGAAGATGGTAGGACCCTTAGTGAC 64878 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| |||||||| || || ||| | ||| | ||||| ||||| |||| ||| Sbjct 64877 TACAACATTCAAAAGGAGTCAACGTTGCATCTTGTGCTCAGGCTTCGAGGTGGA 64824 >seq47 Length=390960 Score = 100 bits (110), Expect = 2e-16 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| |||| |||||| | || Sbjct 276249 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAGCCTTCA 276190 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| || ||| || || |||||||| ||||| ||||| Sbjct 276189 GACACTATTGAAAATGTGAAAGGCAAGATCCAGGATAAGGAAGGGAT-CCACCAGACCAG 276131 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||||||||| ||||| | || |||| || || | |||||||||| Sbjct 276130 CAGCGTCTTATTTTTGCAA--AAACAGTG-GAGGATGGCCGTACCTTCTCCGATTACAAT 276074 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 |||||||| || || || || || Sbjct 276073 ATTCAAAAGGAGTCAACTCTTCA 276051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433278346298630