Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq20 100 6e-16 seq733 91.5 3e-13 seq102 91.5 3e-13 seq486 89.7 1e-12 seq144 89.7 1e-12 >seq20 Length=551401 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| ||| || |||| ||| ||||||||||||||| Sbjct 543543 AGCCCGGTTAGCTCAGTCGGTAGAGCGTTAGGCTTTTAACCTAACGGTCGTGGGTTCGAG 543484 Query 142563 CCCCACATCGGGC 142575 ||||||| ||||| Sbjct 543483 CCCCACACCGGGC 543471 >seq733 Length=78500 Score = 91.5 bits (100), Expect = 3e-13 Identities = 66/74 (89%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGT-GGTCGTGGGTTCGA 142561 ||||||||||||||||||| ||||||| ||| || |||| ||| |||||||||||||| Sbjct 12891 AGCCCGGTTAGCTCAGTCG-TAGAGCGTTAGGCTTTTAACCTAAACGGTCGTGGGTTCGA 12949 Query 142562 GCCCCACATCGGGC 142575 |||||||||||||| Sbjct 12950 GCCCCACATCGGGC 12963 >seq102 Length=293064 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||| ||||||||| Sbjct 193355 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGGGGGTTCGAG 193296 Query 142563 CCCCACATCGGGC 142575 |||| | | |||| Sbjct 193295 CCCCCCGTTGGGC 193283 >seq486 Length=109661 Score = 89.7 bits (98), Expect = 1e-12 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 42817 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCT-CAGGTCGTGGGTTCGA 42875 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 42876 GCCCCACGTTGGGC 42889 >seq144 Length=233880 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 127857 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 127798 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 127797 CCCACGTTGGGC 127786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027712983567082