Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq20 100 6e-16
seq733 91.5 3e-13
seq102 91.5 3e-13
seq486 89.7 1e-12
seq144 89.7 1e-12
>seq20
Length=551401
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||||||||||||||||||||||| ||| || |||| ||| |||||||||||||||
Sbjct 543543 AGCCCGGTTAGCTCAGTCGGTAGAGCGTTAGGCTTTTAACCTAACGGTCGTGGGTTCGAG 543484
Query 142563 CCCCACATCGGGC 142575
||||||| |||||
Sbjct 543483 CCCCACACCGGGC 543471
>seq733
Length=78500
Score = 91.5 bits (100), Expect = 3e-13
Identities = 66/74 (89%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGT-GGTCGTGGGTTCGA 142561
||||||||||||||||||| ||||||| ||| || |||| ||| ||||||||||||||
Sbjct 12891 AGCCCGGTTAGCTCAGTCG-TAGAGCGTTAGGCTTTTAACCTAAACGGTCGTGGGTTCGA 12949
Query 142562 GCCCCACATCGGGC 142575
||||||||||||||
Sbjct 12950 GCCCCACATCGGGC 12963
>seq102
Length=293064
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| | ||||||||||||| | ||||| |||||||||
Sbjct 193355 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGGGGGTTCGAG 193296
Query 142563 CCCCACATCGGGC 142575
|||| | | ||||
Sbjct 193295 CCCCCCGTTGGGC 193283
>seq486
Length=109661
Score = 89.7 bits (98), Expect = 1e-12
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 42817 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCT-CAGGTCGTGGGTTCGA 42875
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 42876 GCCCCACGTTGGGC 42889
>seq144
Length=233880
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 127857 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 127798
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 127797 CCCACGTTGGGC 127786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027712983567082
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |