Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8065 100 2e-16 seq4285 100 2e-16 seq4448 96.9 3e-15 seq159 89.7 4e-13 >seq8065 Length=5948 Score = 100 bits (110), Expect = 2e-16 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||| Sbjct 5719 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAG-TAAGTGCGATCTAAGGAACC 5661 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 5660 ATAACTGATGTAATGAGCCATTCGCGGTTTC 5630 Score = 100 bits (110), Expect = 2e-16 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||| Sbjct 5719 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAG-TAAGTGCGATCTAAGGAACC 5661 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 5660 ATAACTGATGTAATGAGCCATTCGCGGTTTC 5630 >seq4285 Length=15357 Score = 100 bits (110), Expect = 2e-16 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||| Sbjct 4521 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAG-TAAGTGCGATCTAAGGAACC 4463 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 4462 ATAACTGATGTAATGAGCCATTCGCGGTTTC 4432 Score = 100 bits (110), Expect = 2e-16 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||| Sbjct 4521 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAG-TAAGTGCGATCTAAGGAACC 4463 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 4462 ATAACTGATGTAATGAGCCATTCGCGGTTTC 4432 >seq4448 Length=14809 Score = 96.9 bits (106), Expect = 3e-15 Identities = 74/84 (88%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||| Sbjct 2104 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAG-TAAGTGCGATCTAAGGAACC 2046 Query 115589 AAAACTGATATATTGAGCCATTCG 115612 | ||||||| || ||||||||||| Sbjct 2045 ATAACTGATGTAATGAGCCATTCG 2022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 74/84 (88%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||| Sbjct 2104 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAG-TAAGTGCGATCTAAGGAACC 2046 Query 114392 AAAACTGATATATTGAGCCATTCG 114415 | ||||||| || ||||||||||| Sbjct 2045 ATAACTGATGTAATGAGCCATTCG 2022 >seq159 Length=219009 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || || || || |||||||| ||| ||||||||| || ||||| || | Sbjct 158563 ACCACCTCTGAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCCGA 158504 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || | ||| |||| |||||||| || || ||||| || || ||||||||||| Sbjct 158503 CAGTGTTCGGCCGTCTTCCAATTGTTTACCAGCAAAGATGAGACGCTGCTGATC 158450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397016901860404