Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq47 107 2e-18 seq463 102 9e-17 seq159 96.9 4e-15 seq248 95.1 1e-14 seq571 93.3 5e-14 seq2157 91.5 2e-13 seq2337 89.7 6e-13 seq1282 84.2 2e-11 >seq47 Length=390960 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||||| || || || | || || | ||| |||||||| || Sbjct 276742 CTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTACCAGCAAA 276801 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | ||||| ||| ||| || || | | Sbjct 276802 AATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATT 276861 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || | |||||| |||| |||||||| ||||| || || ||||| || Sbjct 276862 TTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 276921 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 276922 AAAAATCTGCAT 276933 Score = 105 bits (116), Expect = 7e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||||| || || || | || || | |||||| ||||| || Sbjct 276515 CTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGACCATCCTCCAACTGCTTTCCAGCAAA 276574 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | |||||| || ||| || |||| | Sbjct 276575 AATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTTGACATT 276634 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || | |||||| |||| |||||||| ||||| || || ||||| || Sbjct 276635 TTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 276694 Query 42197 AAA 42199 ||| Sbjct 276695 AAA 276697 Score = 102 bits (112), Expect = 9e-17 Identities = 139/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTT-ACCAGCGA 42075 |||||||||||| |||||||||| || || || | || || | ||| || |||||| | Sbjct 276286 CTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTTACCAGCAA 276345 Query 42076 ATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135 | || || ||||||||||| | ||| | | ||||| ||| ||| || || | Sbjct 276346 AAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACAT 276405 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || | |||||| |||| |||||||| ||||| || || ||||| | Sbjct 276406 TTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGA 276465 Query 42196 CAAAGATTTGCAT 42208 |||| || ||||| Sbjct 276466 CAAAAATCTGCAT 276478 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCA-GAGTCCGCTCGTCATCTAGCTGCTTACCA--GC 42073 |||||||||||| |||||||||| | | || || | || | | |||||| ||| | Sbjct 276972 CTCCTTTTGAATGTTGTAATCAGAAAGGGGTGCGACCATCTCCCAACTGCTTTCCAAGCC 277031 Query 42074 GAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGA 42132 || || || ||||||||||| | ||| | | |||||| || || | || | |||| Sbjct 277032 AAAAATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTGGAATCTTAGCCTTGA 277091 Query 42133 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| || | |||||| |||| |||||||| ||||| || || |||| Sbjct 277092 CATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCT 277151 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| |||||||| Sbjct 277152 TGACAAAAATTTGCAT 277167 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||||| || || || | || || | ||| || |||| || Sbjct 277665 CTCCTTTTGAATGTTGTAATCAGAAAGCGTACGGCCATC-TCCAACTG-TTTTCAGCAAA 277722 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | ||||| ||| ||| || || | | Sbjct 277723 GATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATT 277782 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| | ||||| |||| |||||||| ||||| || || ||||| || Sbjct 277783 TTCAATAGTGTCGGAAGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTCTTCAC 277842 Query 42197 AAAGATTTGCAT 42208 || |||||||| Sbjct 277843 GAAAATTTGCAT 277854 >seq463 Length=112955 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||||||||| |||||||| | || |||| | || || || || || || || || | Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||| || | || | | |||||||||| ||| || |||| || Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 58372 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | |||||| || | |||||| || | |||||||||||| ||||| || || || || | Sbjct 58371 CGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGA 58312 Query 42199 AGATTTGCATTTTC 42212 | || ||||||||| Sbjct 58311 AAATCTGCATTTTC 58298 >seq159 Length=219009 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||||||||||| ||||| || | || || | ||| |||||||| || Sbjct 159895 TCCTTCTGAATATTGTAATCAGAGAGAGTACGTCCATCCTCCAACTGTTTACCAGCAAAA 159836 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||| ||||| | || | | ||||| || ||| || |||| || Sbjct 159835 ATAAGACGCTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTC 159776 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||||| | ||| || || | |||||||| || || || | ||||| || Sbjct 159775 TCGATCGTGTCGCTGGGTTCTACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACG 159716 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 159715 AAGATCTGCAT 159705 >seq248 Length=162157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 136214 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 136155 Query 57066 ATACTACCGAGGATTGAATATATAAC-TTGAA 57096 |||||| |||||| | ||||||| ||||| Sbjct 136154 ATACTATCGAGGAAGTTAGATATAACGTTGAA 136123 >seq571 Length=97103 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 77377 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 77318 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 77317 ATACTATCGAGGAGTG 77302 >seq2157 Length=30512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 22345 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 22404 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 22405 ATACTATCGAGGA 22417 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 24630 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 24572 >seq2337 Length=28304 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 20564 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGA 20622 >seq1282 Length=50195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| |||||||||||||||| |||| |||||||||||| Sbjct 24972 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACA-GCGGGGATACTCACCACT 24914 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 24913 ATACTATCGAGGA 24901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543148958915680