Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq159 140 3e-28 seq47 125 7e-24 seq263 100 3e-16 seq463 96.9 3e-15 >seq159 Length=219009 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||||||||| || ||||| || || ||| || | || Sbjct 158775 AGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCTGAGGGTACGACCATCC 158716 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | ||||| |||||||| || || ||||| ||||| || ||| Sbjct 158715 TCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTATCT 158656 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || |||| || ||||| |||| ||| | |||| Sbjct 158655 TGGATCTTTGCCTTGACATTCTCGATCGTGTCACTGGGTTCCACCTCTAAAGTGATGGTC 158596 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || ||||| || ||||| Sbjct 158595 TTTCCAGTCAACGTCTTGACGAAGATCTGCAT 158564 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || |||||||| |||||||| || |||| | ||| || | ||| Sbjct 159231 AGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCT 159172 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || ||||| ||| | || || ||||||||||| || ||||| ||||| || ||| Sbjct 159171 TCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 159112 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || |||| || | |||| Sbjct 159111 TGGATCTTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGGTC 159052 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||||||||| ||||| || ||||| Sbjct 159051 TTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 159020 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || ||||||||||||||||| || |||| | || || |||| Sbjct 158227 AAGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTTCGGCCGTC 158168 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| || ||| | ||||| |||||||| || || || || ||||| || || Sbjct 158167 TTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATC 158108 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| || | || ||| || |||||||| | || | ||| Sbjct 158107 TTGAATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGT 158048 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || || || || ||||| Sbjct 158047 CTTTCCTGTAAGGGTCTTGACAAAGATCTGCAT 158015 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| ||||| || ||||| || || |||||| | ||| Sbjct 159003 AGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCT 158944 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || ||| | ||||| ||||| || || || ||||| ||||| || ||| Sbjct 158943 TCCAACTGCTTTCCAGCAAAGATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTTATCT 158884 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | ||||| || | ||| | ||| Sbjct 158883 TGAATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGATGGTT 158824 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | || || || |||||||||||| Sbjct 158823 TTGCCAGTAAGGGTCTTGACAAAAATTTGCATT 158791 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || ||||| |||||||| || || ||| || | || Sbjct 157771 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCATCC 157712 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || | ||||||||||| || ||||| ||||| || ||| Sbjct 157711 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 157652 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || ||| | ||||| || | || | ||| Sbjct 157651 TGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTC 157592 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || || || || ||||| Sbjct 157591 TTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 157560 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || ||||| |||||||| || || ||| || | || Sbjct 159460 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCC 159401 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || | ||||||||||| || ||||| ||||| || ||| Sbjct 159400 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 159341 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || ||| | ||||| || | || | ||| Sbjct 159340 TGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTC 159281 Query 64412 -TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || || || || ||||| Sbjct 159280 TTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 159248 >seq47 Length=390960 Score = 125 bits (138), Expect = 7e-24 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || ||||||||||||||||| | | |||||| | || Sbjct 276494 AAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGACCATC 276553 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | |||||| || ||| |||| || ||||||||||| || || ||||| || || || Sbjct 276554 CTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTATC 276613 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| || | || |||| || ||||| || | ||| | ||| Sbjct 276614 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGT 276673 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| || || ||| |||||| Sbjct 276674 CTTGCCAGTAAGAGTCTTGAC--AAAATTGCAT 276704 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || ||||||||||||||||| | | ||| || | || Sbjct 276721 AAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATC 276780 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | ||| || || ||| |||| || ||||||||||| || || || ||||| || || Sbjct 276781 CTCCAACTGTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATC 276840 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || |||| || ||||| || | ||| | ||| Sbjct 276841 CTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGT 276900 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| || || ||||| ||||| Sbjct 276901 CTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276933 Score = 113 bits (124), Expect = 5e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || ||||||||||||||||| | | ||| || | || Sbjct 276265 AAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATC 276324 Query 64291 TTCAAGCTGCTTG-CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 || | ||| || || ||| |||| || ||||||||||| || || || ||||| || | Sbjct 276325 CTCCAACTGTTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTAT 276384 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 | || || || ||| ||| || | || |||| || ||||| || | ||| | || Sbjct 276385 CCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGG 276444 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| || | ||| || || ||||| ||||| Sbjct 276445 TCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276478 Score = 113 bits (124), Expect = 5e-20 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCT--TTTTGAATGTTGTAATCTGCGACGG-TGCGCGC 64287 ||| || ||||||| || || || ||||||||||||||||| | | || |||| | Sbjct 276949 AAGGACAAGATGAAGGGTAGAGACTCCTTTTGAATGTTGTAATCAGAAAGGGGTGCGACC 277008 Query 64288 GTCTTCAAGCTGCTTGCC--GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 ||| | | |||||| || | || |||| || ||||||||||| || || ||||| || Sbjct 277009 ATCTCCCAACTGCTTTCCAAGCCAAAAATAAGACGCTGCTGGTCTGGTGGGATTCCCTCC 277068 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | | || || || ||| || | || |||| || ||||| || | ||| Sbjct 277069 TTATCTTGGAATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGT 277128 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||||||| || | ||| || || ||||||||||| Sbjct 277129 GATGGTCTTGCCAGTAAGAGTCTTGACAAAAATTTGCAT 277167 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || ||||||||||||||||| | | || || | || Sbjct 277644 AAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGCGTACGGCCATC 277703 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 | ||| ||| || | | || | || || ||||||||||| || || || ||||| || || Sbjct 277704 TCCAA-CTGTTTTCAG-CAAAGATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATC 277761 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || | ||||| || | ||| | ||| Sbjct 277762 CTGGATCTTGGCCTTCACATTTTCAATAGTGTCGGAAGGCTCCACCTCGAGAGTGATGGT 277821 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || || |||||||||||||| Sbjct 277822 CTTGCCAGTGAGTGTCTTCACGAAAATTTGCAT 277854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGC-GCGCGT 64289 ||| || ||||||| || || || ||||||||||||||||| | | ||| | || | | Sbjct 277183 AAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCCAT 277242 Query 64290 -CTTCAAGCTGCTTGCCGGC-ATAAATGAGCCGC-TGCTGGTC-GGGAGGAATTCCTTCT 64345 || ||| ||| || || || | |||| || ||| |||||||| ||| || | |||||| Sbjct 277243 CCTCCAAACTGTTTACCAGCAAAAAATAAGACGCTTGCTGGTCTGGGTGGGA-TCCTTCC 277301 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || || || || || ||| ||| || | || || | ||||| || | ||| Sbjct 277302 TTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCCACCTCGAGAGTG 277361 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||||||| || | ||| || || ||||| ||||| Sbjct 277362 ATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 277399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || ||||||||||||||||| | | ||| || | || Sbjct 277415 AAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATC 277474 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTG--GTCGGGAGGAATTCCTTCTTTT 64348 || | ||| || || ||| | || || |||||| | ||| || || || ||||| || Sbjct 277475 CTCCAACTGTTTTCCAGCAAAGATAAGACGCTGCCGGCGTCTGGTGG-ATCCCTTCCTTA 277533 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| ||| || | || || | ||||| || | ||| | | Sbjct 277534 TCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCCACCTCGAGAGTGATG 277593 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| || | ||| || || ||||| ||||| Sbjct 277594 GTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 277628 >seq263 Length=158529 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| ||||| | ||| || || |||||||||||||| || | ||| | | Sbjct 64837 CTGAGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCA 64896 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| ||||| || |||||| | || | ||||| ||||| || || ||||| || || Sbjct 64897 TCTTCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTG 64956 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| || | ||||||| || || || || | || | Sbjct 64957 TCTTGGATCTTGGCCTTGACATTTTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATA 65016 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| ||||| || || || ||||| Sbjct 65017 GTTTTCCCAGTCAATGTTTTCACAAAGATCTGCAT 65051 >seq463 Length=112955 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||||||||||||||| | || || | | || || || || || |||||| | || Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||| || || || ||||| || || || || || || ||| ||| ||| Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 58370 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || |||| || ||||| || | || | ||| || || || | ||||| |||||| Sbjct 58369 ATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAA 58310 Query 64436 ATTTGCATTTT 64446 || |||||||| Sbjct 58309 ATCTGCATTTT 58299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499586079244880