Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq263 104 2e-17
seq159 104 2e-17
seq463 96.9 3e-15
seq47 89.7 5e-13
>seq263
Length=158529
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|||||||| || | | | ||| | ||| | ||| ||||| |||||||| ||||| ||
Sbjct 64822 GCTCCACCTCGAAGCCTGAGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCA 64881
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| | || | | ||| || |||||||| || || ||||||| ||||| || || ||
Sbjct 64882 CTAAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGG 64941
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || ||||||||||| ||| || ||||| | ||||| || || | ||
Sbjct 64942 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTATCACTGGGTTCA 65001
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||||| || |||| ||||| ||||| ||||||||
Sbjct 65002 ACCTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCACAAAGATCTGCAT 65051
>seq159
Length=219009
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || ||||| |||||||| |||| | |||||| ||| || | ||| ||||||
Sbjct 157528 GTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCA 157469
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035
|| |||| | || || ||||| || || ||||| ||||| || ||| | | ||| ||
Sbjct 157468 GCAAAGATGAGACGTTGTTGATCTGGGGGAATGCCTTCCTTATCT-TGAATCTTTGCCTT 157410
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| | ||||| ||||| | | ||| || || | ||| | ||| ||||| || || ||
Sbjct 157409 CACATTTTCGATAGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGTGT 157350
Query 127096 TTTTACAAAAATCTGCATG 127114
|| || ||||||||||||
Sbjct 157349 CTTCACGAAAATCTGCATG 157331
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||||||||| | || | || | ||| | || || |||||||| |||||||| ||||
Sbjct 158791 TCCACCGCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCT 158732
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| || ||| ||| || || || |||||||| |||| | ||||||||||| || ||
Sbjct 158731 GAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGG 158672
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || ||||| || ||| || ||||| | |||| ||||| | || ||
Sbjct 158671 AATACCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCACTGGGTTCCAC 158612
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || |||| || || || || ||||||||
Sbjct 158611 CTCTAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAGATCTGCAT 158564
>seq463
Length=112955
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|||||||| ||||||||| | || | ||| || || |||||||| || |||||
Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| ||||||||||| || || || |||||||||||| ||| || ||||| | |||
Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 58370
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | || || || | || | ||||| || || || ||||| || |||
Sbjct 58369 ATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAA 58310
Query 127106 ATCTGCAT 127113
||||||||
Sbjct 58309 ATCTGCAT 58302
>seq47
Length=390960
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| |||||||| |||||||| | || || ||| || | |||||| |||
Sbjct 276737 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTACCA 276796
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| | || | |||||||| || || || || || ||||| ||| ||| || |||
Sbjct 276797 GCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 276856
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | ||| | |||||| | || || |||| || | || ||||| || |||||
Sbjct 276857 ACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTC 276916
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||||||||||||
Sbjct 276917 TTGACAAAAATCTGCAT 276933
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/198 (70%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTT-CC 126975
|||||||| |||||||| |||||||| | || || ||| || | ||||||| ||
Sbjct 276281 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTTACC 276340
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
||| | || | |||||||| || || || || || ||||| ||| ||| || |||
Sbjct 276341 AGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTT 276400
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| | ||| | |||||| | || || |||| || | || ||||| || |||||
Sbjct 276401 CACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGT 276460
Query 127096 TTTTACAAAAATCTGCAT 127113
|| ||||||||||||||
Sbjct 276461 CTTGACAAAAATCTGCAT 276478
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/199 (70%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| |||||||| |||||||| | || || ||| || | ||||||||||
Sbjct 277431 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTTCCA 277490
Query 126977 GCGTAGATCAATCGCTGCTG--ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCT 127034
|| |||| | |||||| | || || || || || ||||| ||| ||| || ||
Sbjct 277491 GCAAAGATAAGACGCTGCCGGCGTCTGGTGG-ATCCCTTCCTTATCCTGGATCTTGGCCT 277549
Query 127035 TGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
| | | ||| | ||||| | | ||| || |||| || | || ||||| || ||||
Sbjct 277550 TCACATTTTCAATAGTGTCTGAAGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAG 277609
Query 127095 TTTTTACAAAAATCTGCAT 127113
| || ||||||||||||||
Sbjct 277610 TCTTGACAAAAATCTGCAT 277628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475444916768480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |