Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq263 104 2e-17 seq159 104 2e-17 seq463 96.9 3e-15 seq47 89.7 5e-13 >seq263 Length=158529 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 |||||||| || | | | ||| | ||| | ||| ||||| |||||||| ||||| || Sbjct 64822 GCTCCACCTCGAAGCCTGAGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCA 64881 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || | | ||| || |||||||| || || ||||||| ||||| || || || Sbjct 64882 CTAAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGG 64941 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||||||| ||| || ||||| | ||||| || || | || Sbjct 64942 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTATCACTGGGTTCA 65001 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||||| || |||| ||||| ||||| |||||||| Sbjct 65002 ACCTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCACAAAGATCTGCAT 65051 >seq159 Length=219009 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || ||||| |||||||| |||| | |||||| ||| || | ||| |||||| Sbjct 157528 GTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCA 157469 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||| | || || ||||| || || ||||| ||||| || ||| | | ||| || Sbjct 157468 GCAAAGATGAGACGTTGTTGATCTGGGGGAATGCCTTCCTTATCT-TGAATCTTTGCCTT 157410 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||||| ||||| | | ||| || || | ||| | ||| ||||| || || || Sbjct 157409 CACATTTTCGATAGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGTGT 157350 Query 127096 TTTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 157349 CTTCACGAAAATCTGCATG 157331 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | || | ||| | || || |||||||| |||||||| |||| Sbjct 158791 TCCACCGCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCT 158732 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || || || |||||||| |||| | ||||||||||| || || Sbjct 158731 GAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGG 158672 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || ||| || ||||| | |||| ||||| | || || Sbjct 158671 AATACCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCACTGGGTTCCAC 158612 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| || || || || |||||||| Sbjct 158611 CTCTAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAGATCTGCAT 158564 >seq463 Length=112955 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 |||||||| ||||||||| | || | ||| || || |||||||| || ||||| Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || ||||||||||| || || || |||||||||||| ||| || ||||| | ||| Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 58370 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | || || || | || | ||||| || || || ||||| || ||| Sbjct 58369 ATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAA 58310 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 58309 ATCTGCAT 58302 >seq47 Length=390960 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||| |||||||| | || || ||| || | |||||| ||| Sbjct 276737 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTACCA 276796 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | |||||||| || || || || || ||||| ||| ||| || ||| Sbjct 276797 GCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 276856 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | || || |||| || | || ||||| || ||||| Sbjct 276857 ACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTC 276916 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 276917 TTGACAAAAATCTGCAT 276933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTT-CC 126975 |||||||| |||||||| |||||||| | || || ||| || | ||||||| || Sbjct 276281 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTTACC 276340 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| | || | |||||||| || || || || || ||||| ||| ||| || ||| Sbjct 276341 AGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTT 276400 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | |||||| | || || |||| || | || ||||| || ||||| Sbjct 276401 CACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGT 276460 Query 127096 TTTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 276461 CTTGACAAAAATCTGCAT 276478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||| |||||||| | || || ||| || | |||||||||| Sbjct 277431 GTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTTCCA 277490 Query 126977 GCGTAGATCAATCGCTGCTG--ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCT 127034 || |||| | |||||| | || || || || || ||||| ||| ||| || || Sbjct 277491 GCAAAGATAAGACGCTGCCGGCGTCTGGTGG-ATCCCTTCCTTATCCTGGATCTTGGCCT 277549 Query 127035 TGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | | | ||| | ||||| | | ||| || |||| || | || ||||| || |||| Sbjct 277550 TCACATTTTCAATAGTGTCTGAAGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAG 277609 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || |||||||||||||| Sbjct 277610 TCTTGACAAAAATCTGCAT 277628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475444916768480