Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq159 145 7e-30 seq1326 91.5 1e-13 seq47 84.2 2e-11 >seq159 Length=219009 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || ||||||||||||||||| || ||| Sbjct 159021 ATGCCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCG 158962 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| | ||| ||||| || ||||| || | || | || || || || || Sbjct 158961 CTGAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGTTGATCTGGG 158902 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||||||||| || || | ||| | ||||||||||| ||| Sbjct 158901 GGAATGCCTTCCTTATCTTGAATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGGCTCC 158842 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | |||||||| || || || || |||||||||||||| Sbjct 158841 ACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 158792 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || ||||||||||||||||| || ||| Sbjct 157561 ATGCCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCG 157502 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| | ||| ||||| || ||||| || | || | ||||| || || || Sbjct 157501 CTGAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGTTGATCTGGG 157442 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||||||||| ||| || | ||| | ||||| |||| ||| Sbjct 157441 GGAATGCCTTCCTTATCTTGAATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCC 157382 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| ||||| || || || || || ||||| ||||| Sbjct 157381 ACCTCAAGGGTGATCGTCTTGCCAGTGAGTGTCTTCACGAAAATCTGCAT 157332 Score = 118 bits (130), Expect = 1e-21 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||||||||| || || ||||||| |||| ||| || Sbjct 159457 ACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCCTCA 159398 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| || | ||||| || |||||||| || ||||||||||| || ||||| Sbjct 159397 AGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 159338 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT-TTT 45310 || || |||| ||| | |||||| |||| ||| || || || || | ||| ||| Sbjct 159337 ATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTT 159278 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| || ||||| || ||||| Sbjct 159277 TCCAGTCAAAGTCTTGACAAAGATCTGCAT 159248 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||||||||| || || ||||||| ||| ||| || Sbjct 157768 ACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCA 157709 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| || | ||||| || |||||||| || ||||||||||| || ||||| Sbjct 157708 AGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 157649 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | |||||| |||| ||| || || || || | ||| || Sbjct 157648 ATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTT 157589 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| || ||||| || ||||| Sbjct 157588 CCAGTCAAAGTCTTGACAAAGATCTGCAT 157560 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | || ||||| || || ||||| ||||||||||| || ||| Sbjct 158793 ATTCCACCGCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCG 158734 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| | ||| || | ||| ||||| || | || | || ||||| || || Sbjct 158733 CTGAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGG 158674 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||||| |||||||| || ||| Sbjct 158673 GGAATACCTTCCTTATCTTGGATCTTT 158647 >seq1326 Length=48828 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160 ||||||||||| || |||||||| | || || || |||||||||| ||| | |||| Sbjct 34155 ATTTTGCAGTATGATATGTGGAACGTAACTCCAACCGATTTGTGGGATTGGTCCAGTTTA 34214 Query 124161 AAACAACGCATA--TCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGA 124218 ||||| ||| || | |||||| | || || || | | |||| ||||| | Sbjct 34215 AAACAGAAAATAAGTCAA--CACGGTCTTCGAAATTCTTTACTTTTGGCTCCAATGCCTA 34272 Query 124219 CGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACT--AACAA 124276 | ||| | ||||| |||||||| || ||||| || ||| | || | | |||| || | Sbjct 34273 CTGCATCTACTGCCCAAATTTTGGGCAACAATGAGTCCATTGAAGCATACACTTCAAATA 34332 Query 124277 TTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGA 124317 ||| |||| | || |||||||| | || || ||||| |||| Sbjct 34333 TTTATACGAG-GA-GAGTGTTATCTGGAGAATTTCAGGTGA 34371 >seq47 Length=390960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || |||||||| || || ||||| Sbjct 277627 ATCCCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCA 277686 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||| ||||||| || | || | || |||||||| || Sbjct 277687 GAAAGCGTACGGCCATC-TCCAACTGTTTTCA-GCAAAGATAAGACGCTGCTGGTCTGGT 277744 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||| || || || || | ||| | |||||||||| ||| Sbjct 277745 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCGGAAGGCTCC 277804 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | || ||||| || || || || || ||||||||||| Sbjct 277805 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAAATTTGCAT 277854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451950078323920