Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq159 145 7e-30
seq1326 91.5 1e-13
seq47 84.2 2e-11
>seq159
Length=219009
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || ||||| || || ||||||||||||||||| || |||
Sbjct 159021 ATGCCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCG 158962
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|||| ||| | ||| ||||| || ||||| || | || | || || || || ||
Sbjct 158961 CTGAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGTTGATCTGGG 158902
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||||||||| ||||||||||| || || | ||| | ||||||||||| |||
Sbjct 158901 GGAATGCCTTCCTTATCTTGAATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGGCTCC 158842
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| | |||||||| || || || || ||||||||||||||
Sbjct 158841 ACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 158792
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || ||||| || || ||||||||||||||||| || |||
Sbjct 157561 ATGCCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCG 157502
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|||| ||| | ||| ||||| || ||||| || | || | ||||| || || ||
Sbjct 157501 CTGAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGTTGATCTGGG 157442
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||||||||| ||||||||||| ||| || | ||| | ||||| |||| |||
Sbjct 157441 GGAATGCCTTCCTTATCTTGAATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCC 157382
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | ||| ||||| || || || || || ||||| |||||
Sbjct 157381 ACCTCAAGGGTGATCGTCTTGCCAGTGAGTGTCTTCACGAAAATCTGCAT 157332
Score = 118 bits (130), Expect = 1e-21
Identities = 153/210 (73%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || || ||||||||||| || || ||||||| |||| ||| ||
Sbjct 159457 ACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCCTCA 159398
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| ||||| || | ||||| || |||||||| || ||||||||||| || |||||
Sbjct 159397 AGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 159338
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT-TTT 45310
|| || |||| ||| | |||||| |||| ||| || || || || | ||| |||
Sbjct 159337 ATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTT 159278
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | ||| || ||||| || |||||
Sbjct 159277 TCCAGTCAAAGTCTTGACAAAGATCTGCAT 159248
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || || ||||||||||| || || ||||||| ||| ||| ||
Sbjct 157768 ACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCA 157709
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| ||||| || | ||||| || |||||||| || ||||||||||| || |||||
Sbjct 157708 AGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 157649
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || |||| ||| | |||||| |||| ||| || || || || | ||| ||
Sbjct 157648 ATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTT 157589
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | ||| || ||||| || |||||
Sbjct 157588 CCAGTCAAAGTCTTGACAAAGATCTGCAT 157560
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| |||||||| | | || ||||| || || ||||| ||||||||||| || |||
Sbjct 158793 ATTCCACCGCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCG 158734
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|||| ||| | ||| || | ||| ||||| || | || | || ||||| || ||
Sbjct 158733 CTGAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGG 158674
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| ||||| |||||||| || |||
Sbjct 158673 GGAATACCTTCCTTATCTTGGATCTTT 158647
>seq1326
Length=48828
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/221 (71%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160
||||||||||| || |||||||| | || || || |||||||||| ||| | ||||
Sbjct 34155 ATTTTGCAGTATGATATGTGGAACGTAACTCCAACCGATTTGTGGGATTGGTCCAGTTTA 34214
Query 124161 AAACAACGCATA--TCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGA 124218
||||| ||| || | |||||| | || || || | | |||| ||||| |
Sbjct 34215 AAACAGAAAATAAGTCAA--CACGGTCTTCGAAATTCTTTACTTTTGGCTCCAATGCCTA 34272
Query 124219 CGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACT--AACAA 124276
| ||| | ||||| |||||||| || ||||| || ||| | || | | |||| || |
Sbjct 34273 CTGCATCTACTGCCCAAATTTTGGGCAACAATGAGTCCATTGAAGCATACACTTCAAATA 34332
Query 124277 TTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGA 124317
||| |||| | || |||||||| | || || ||||| ||||
Sbjct 34333 TTTATACGAG-GA-GAGTGTTATCTGGAGAATTTCAGGTGA 34371
>seq47
Length=390960
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || ||||| || || || |||||||| || || |||||
Sbjct 277627 ATCCCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCA 277686
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| ||||| ||||||| || | || | || |||||||| ||
Sbjct 277687 GAAAGCGTACGGCCATC-TCCAACTGTTTTCA-GCAAAGATAAGACGCTGCTGGTCTGGT 277744
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || ||||| ||||| || || || || | ||| | |||||||||| |||
Sbjct 277745 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCGGAAGGCTCC 277804
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| |||||||| | || ||||| || || || || || |||||||||||
Sbjct 277805 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAAATTTGCAT 277854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451950078323920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |