Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq159 125 5e-24 seq263 96.9 2e-15 seq463 95.1 8e-15 >seq159 Length=219009 Score = 125 bits (138), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| ||||||||||||||||||||| |||||| | ||| |||| |||| ||| Sbjct 159222 TGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCTTCCAATTGT 159163 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || || ||||| || || || ||||||||| | || | || |||||||| ||||| Sbjct 159162 TTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTG 159103 Query 34899 TGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956 ||||| || || |||| |||| || || || || | ||| ||||| ||||| | Sbjct 159102 GCCTTGAC--ATTCTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGGTCTTTCCAG 159045 Query 34957 TGAGAGTCTTCACAAAGATCTGCAT 34981 | | ||| || || ||||||||||| Sbjct 159044 TCAAAGTTTTGACGAAGATCTGCAT 159020 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| |||||| |||||||||||||| || | |||| | || |||| ||| Sbjct 158217 TGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTTCGGCCGTCTTCCAACTGC 158158 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 ||||| ||||| || || || ||||| ||| | || | || ||||| || |||||| Sbjct 158157 TTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTA 158098 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 || || | | || | ||| || ||| || || | || ||||| ||||| || Sbjct 158097 GCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCTGTA 158038 Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||||||||||||| Sbjct 158037 AGGGTCTTGACAAAGATCTGCATA 158014 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || || || || | ||| |||| |||| |||||| || ||||| Sbjct 159896 TTCCTTCTGAATATTGTAATCAGAGAGAGTACGTCCATCCTCCAACTGTTTACCAGCAAA 159837 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | || ||||| || ||||| ||||| | Sbjct 159836 AATAAGACGCTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGAC--A 159779 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| || | || || || || | || ||||| ||||| || | |||||| Sbjct 159778 TTCTCGATCGTGTCGCTGGGTTCTACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTG 159719 Query 34968 ACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 159718 ACGAAGATCTGCATA 159704 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| ||| |||| |||| || || || ||||| ||||| Sbjct 159439 TCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCCTCAAGTTGCTTTCCAGCAAAG 159380 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | || |||||||| ||||| ||||| | Sbjct 159379 ATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACATTT 159320 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT-TTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | ||| || || | ||| || || |||||| || | |||||| || Sbjct 159319 TCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTTTCCAGTCAAAGTCTTGAC 159260 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 159259 AAAGATCTGCAT 159248 >seq263 Length=158529 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| |||| | | |||| || |||||||| |||||||| Sbjct 64861 TCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAAG 64920 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || |||||| | || | ||||||||||| ||||| ||||| | Sbjct 64921 ATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTT 64980 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||||| || | ||| || ||||| || || | || |||||| Sbjct 64981 TCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCACA 65040 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 65041 AAGATCTGCAT 65051 >seq463 Length=112955 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || |||||||| || || || || | | | |||| || || |||||||||||||| || Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | || ||||| || | || | ||||||||||| ||||| ||||| || || Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCT 58372 Query 34914 --ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 |||| |||| || || || || | || |||||||| |||||||| || || || | Sbjct 58371 CGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGA 58312 Query 34972 AGATCTGCATATTCG 34986 | |||||||| |||| Sbjct 58311 AAATCTGCATTTTCG 58297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324596401250256