Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1672 118 1e-21 seq1326 102 9e-17 >seq1672 Length=38749 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 ||||||||| ||||| | |||||| || || ||||||||||||||||| |||| ||||| Sbjct 32219 GTACATTTCGGAATGCACATTTTCCATCGCAATCTGAAATCCGTAAAAGCATCGGGCTTC 32160 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || | || ||||| | |||| || ||||| ||||| ||||| ||||||||| Sbjct 32159 GGTGACTTGCACTTCCTGGCTGAATCGCTCCACCAAGTTTTCGTTAACAATTCCATCAGA 32100 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC 19418 |||||||| || || || ||||| |||||| | ||||||| Sbjct 32099 TGCTGCAAAGAAGGCCAAGACATGGGAAATAAATTTCCTTTCATC 32055 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || ||| ||| || | || ||||| ||||| | || || | |||||| || || ||| Sbjct 32576 TCGTTACTAAAGGTCAGGCCTGGCATAAGTCCACGCTTCTTGAGCCAGAAGATGGATGCA 32517 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || |||||| || ||||| ||||| |||||||||||||||| | ||||| || || Sbjct 32516 AAGCTTCCAGAGAAAAATATCCCTTCAACTGCTGCAAAAGCAATCACCCTTTCAGCAAAA 32457 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 ||| | |||| | |||||| ||| ||||| ||||||||||| || || |||||| Sbjct 32456 GTAGAGTTCTTATCAGCAATCCAGGACAGAGCCCAGTCAGCCTTCTTCTTAACGCATGGC 32397 Query 19183 ATTGTCTCTATAGAATTAAATAGATA 19208 || || || | | ||| || || || Sbjct 32396 ATGGTTTCAACGGCATTGAAAAGGTA 32371 Score = 86.0 bits (94), Expect = 7e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAA-AGAATTCTCTTCATTAGAATTCATTACTCCCATTT 18670 |||||||||| |||||| | ||| | ||| || || || ||||| ||||| | Sbjct 33149 TTAAAAATCAGCATCCAGGGTAAATACCATT-TCATCCTTTTTGTTCATGACTCCTGCCT 33091 Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||| || ||| |||| | ||||||||||| || ||||| || || | ||| ||| | Sbjct 33090 TTTGGTACTCGCCAACCTTCTTTTCAAAGAAGTTTGTTTTGCCTTCCAGTGAGATATGCT 33031 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATA 18761 ||||||||||||| ||||| | ||||| || Sbjct 33030 CCATAAAATCAAAGGGATTCTCAACATTGTA 33000 >seq1326 Length=48828 Score = 102 bits (112), Expect = 9e-17 Identities = 290/441 (66%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || || || |||||||| | ||||| || || || || || ||||| | ||| || || Sbjct 32970 TTGTTTCCACCTTGATCCACGTATCTTGCCGTGTTATTGTAGACTCTCAGCATAGGAACC 32911 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTAC 48471 | ||| || || || || ||||| || ||| || || | || || || | | Sbjct 32910 AAACCGTTGGAGATTCCGTTGGTACCACCAATGTACGACCCTGTTGCCCTGATGCAGTGA 32851 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 ||||| || || ||||| || ||||||| || | || ||| | ||||| |||| Sbjct 32850 ACATTGAGT--CCGATGCCACCAGCGCTTTTAGAAATCAATGCGCACTGCTTAAGAGTAT 32793 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 ||||||||||||| || || || || ||| | | || || ||| || | ||| | Sbjct 32792 CATAAATTCCTTCAATGCTGTCTTCCTGCATTGTAAGAAGGAAGCAAGAGGAAAGTTGAG 32733 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | ||| | | ||| || || | ||||||| ||| | |||||| ||| || | Sbjct 32732 GTCTTGTAGTGGCAGCATTGAA-AAGAGTCGAGATGCGTGAGTGAACCATCGCTCAGACA 32674 Query 48652 ACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACAC 48711 || || || ||||||||| | | ||| || || | ||| || || || | || | Sbjct 32673 TTAAATTGTAAGTTTCAATAGCCGCATCAATGTCATCATCATGAATCCCAATTGCAACTC 32614 Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATT 48771 ||||| ||| | ||| |||| ||| ||| ||| || || |||| ||| || ||| Sbjct 32613 TCATTAGCATGTGTTGTGGTCGTTCCGCAACTTTTCCGTTGATCTTCAGAAGGTACGATC 32554 Query 48772 TTTCCAATGTTTTAAAACCAA 48792 ||||| | | ||||| ||| Sbjct 32553 GCTCCAA-GGTCTAAAATCAA 32534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/193 (71%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAG 47922 ||| || |||| | || |||||||| | ||| || || |||| |||| || || || Sbjct 33657 ACATACATATTCACAGCAATAGATGCCAAATTGCACACGGCTATTTCATCCTTTGA--AG 33600 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 ||| | | |||||||| || | ||| ||||||||| || || | ||| || |||| Sbjct 33599 AATACTCGACTATTTCAGTGCACAAATTTGAACATTTGATGGTTCCAAGATTCTGCTGAT 33540 Query 47983 T--ATTNNNNTTG-TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCT 48039 | ||| | | ||||| || |||||||| | || | |||||||||||||| || | Sbjct 33539 TGGATTT---TCGATTACACGCATCCTTGTACAACAAGTATGGTGTTCCAGTTTCGATTT 33483 Query 48040 GAGATTCAATGAT 48052 | |||||||| || Sbjct 33482 GGGATTCAATAAT 33470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||||||||||| ||||| | |||| ||||| || |||| ||| || || Sbjct 34366 TGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATGGAC 34307 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 ||||| || || |||||||| ||||| ||||| |||||||| Sbjct 34306 TCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCAT 34266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562042738163280